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ingest: Update geolocation_rules.tsv
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Applying annotation for divison of `A/domesticcat/UnitedStates/24-009311-006/2024`
across the board to use '?' for divisions that are unknown.
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joverlee521 committed May 30, 2024
1 parent f04d275 commit 4346e82
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Showing 2 changed files with 3 additions and 3 deletions.
1 change: 0 additions & 1 deletion ingest/build-configs/ncbi/defaults/annotations.tsv
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# Lines starting with '#' are treated as comments
# Any '#' after the field value are treated as comments.
A/environment/USA/CO-UW-9084466/2024 division Colorado # Based on linked BioSample https://www.ncbi.nlm.nih.gov/biosample/SAMN41462555
A/domesticcat/UnitedStates/24-009311-006/2024 division ? # Better to unknown division be listed as unknown than as "USA"
A/environment/USA/CO-UW-9084466/2024 host Cattle # This sequence from commercial milk is definitively from cattle, strain name guidelines are going to be updated here
5 changes: 3 additions & 2 deletions ingest/defaults/geolocation_rules.tsv
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@@ -1,5 +1,6 @@
North America/USA// North America/USA/USA/USA
North America/USA/UNK/UNK North America/USA/USA/USA
# Better to unknown division be listed as unknown than as "USA"
North America/USA// North America/USA/?/?
North America/USA/UNK/UNK North America/USA/?/?
North America/USA/CA/CA North America/USA/California/California
North America/USA/KS/KS North America/USA/Kansas/Kansas
North America/USA/MI/MI North America/USA/Michigan/Michigan
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