Code

Nextclade assignment#16

Code

Merged

j23414 merged 11 commits intomainnextstrain/dengue:mainfrom nextclade_assignmentnextstrain/dengue:nextclade_assignmentCopy head branch name to clipboardFeb 24, 2024

+496,467-20

Commits

Commits on Feb 23, 2024

• ingest/nextclade: Add nextclade dengue dataset

  j23414

  committed
  9a371df

• ingest/nextclade: Restore nextclade assignment rules

  Show description for e73fd31
  j23414

  committed
  e73fd31

• ingest/nextclade: Set final targets

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  committed
  19891d8

• ingest/nextclade: Update to Nextclade v3

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  committed
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• ingest/nextclade: Add labeled example data

  j23414

  committed
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• ingest/nextclade: Delete the serotype nextclade dataset

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  j23414

  committed
  467845f

• ingest/nextclade: Adjust input length on nextclade runs

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  j23414

  committed
  299bbb4

• ingest/nextclade: Move nextclade params into config file

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• ingest/nextclade: Split out the join_nextclade_clades rule into 3 separate rules for clarity

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  j23414

  and

  joverlee521

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  fb5d379

• Include a nextstrain-pathogen.yaml file at the top level of the pathogen

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  j23414

  committed
  30070f3

• ingest: Update docs

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  committed
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