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squash! 🚧 Install Snakemake 8.1.1
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8.1.2 is the correct version to target to avoid pulp pin
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victorlin committed Aug 22, 2024
1 parent 5b90dc4 commit fdf3890
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4 changes: 2 additions & 2 deletions Dockerfile
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Expand Up @@ -244,10 +244,10 @@ RUN python3 -m venv /usr/local/libexec/awscli \
&& ln -sv /usr/local/libexec/awscli/bin/aws /usr/local/bin/aws

# Install Snakemake and related optional dependencies.
# FIXME: Pin a later version? I chose 8.1.1 to remove the pulp pin.
# FIXME: Pin a later version? I chose 8.1.2 to remove the pulp pin.
# Consider skimming the changelog.
# https://snakemake.readthedocs.io/en/stable/project_info/history.html
RUN pip3 install snakemake[reports]==8.1.1
RUN pip3 install snakemake[reports]==8.1.2
# Google Cloud Storage package is required for Snakemake to fetch remote files
# from Google Storage URIs.
RUN pip3 install google-cloud-storage==2.7.0
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