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Issues: nf-core/modules

Caused by: java.nio.channels.OverlappingFileLockException
#6664 by edmundmiller was closed Nov 18, 2024
Closed 13
Batch module updates - Fall 2024
#5828 opened Jun 18, 2024 by edmundmiller
Open 15
Renovate Dashboard 🤖
#4211 opened Oct 24, 2023 by renovate bot
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465 Open 1,375 Closed
465 Open 1,375 Closed
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Issues list

update module: BBMAP/REPAIR update module
#7248 opened Dec 19, 2024 by mazzalab
4 tasks done
1
new module: leafcutter/clusterregtools new module Adding a new module
#7247 opened Dec 18, 2024 by JTL-lab
4 tasks done
new module: leafcutter/differential_splicing new module Adding a new module
#7246 opened Dec 18, 2024 by JTL-lab
4 tasks done
CI: implement smart sharding
#7245 opened Dec 18, 2024 by sateeshperi
@GallVp @sateeshperi
new module: KMA new module Adding a new module
#7242 opened Dec 18, 2024 by Krannich479
6 of 8 tasks
@Krannich479
update module: GZRT update module
#7240 opened Dec 18, 2024 by mazzalab
4 tasks done
1
new module: kma index new module Adding a new module
#7235 opened Dec 17, 2024 by Krannich479
4 tasks done
1
@Krannich479
Parabricks modules need stageInMode 'copy' bug Something isn't working
#7226 opened Dec 16, 2024 by famosab
2 tasks done
new module: VueGen
#7204 opened Dec 12, 2024 by sayalaruano
4 tasks done
1
new module: AGAT/SPFILTERBYORFSIZE new module Adding a new module
#7187 opened Dec 10, 2024 by GallVp
4 tasks done
@GallVp
bbmap/bbduk sometimes fails to create the versions.yml file bug Something isn't working
#7183 opened Dec 9, 2024 by mantisps
2 tasks done
cellranger multi with gene expression and CRISPR data fails to process CRISPR data bug Something isn't working
#7174 opened Dec 6, 2024 by svigneau
2 tasks done
1
new module: Portcullis
#7172 opened Dec 6, 2024 by blancoheredia
3 of 4 tasks
new module: PALOM new module Adding a new module
#7165 opened Dec 5, 2024 by kbestak
4 tasks done
@kbestak
Having multiple tools with version breaks pipeline (muse/sump) bug Something isn't working
#7164 opened Dec 5, 2024 by famosab
2 tasks done
spotiflow not tagged as an "image" module bug Something isn't working
#7159 opened Dec 4, 2024 by tischi
2 tasks done
new module: CAREamics new module Adding a new module
#7157 opened Dec 4, 2024 by diyasrivas
4 tasks done
@melisande-c @diyasrivas
1
new module: INSTANSEG new module Adding a new module
#7152 opened Dec 4, 2024 by migueLib
4 tasks done
@migueLib
What is the meaning "seed" value in module STITCH?
#7150 opened Dec 4, 2024 by thanhtruc66
CI: nf-test shard jobs to have test/tag names
#7128 opened Nov 30, 2024 by sateeshperi
1
new module: MDUST new module Adding a new module
#7076 opened Nov 25, 2024 by GallVp
4 tasks done
@GallVp
new module: CTAT/SPLICING new module Adding a new module
#7057 opened Nov 22, 2024 by matthdsm
4 tasks done
@matthdsm @ToonRosseel @nvnieuwk
1
[FEATURE] move nf-test tests from gatk4/asereadcounter in a tests folder
#7046 opened Nov 21, 2024 by maxulysse
Remove params.hisat2_build_memory from hisat2/build
#7045 opened Nov 21, 2024 by maxulysse
Address limitations of using nf-test sharding
#7018 opened Nov 18, 2024 by edmundmiller
1
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