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Pull requests: nf-core/modules

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182 Open 5,224 Closed
182 Open 5,224 Closed
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Pull requests list

ADD CATPACK_DOWNLOAD
#7253 opened Dec 19, 2024 by jfy133 Loading…
17 tasks
1
10
New kma module new module Adding a new module WIP Work in progress
#7251 opened Dec 19, 2024 by Krannich479 Loading…
9 of 14 tasks
@Krannich479
14
Update Prokka to take compressed input && tidy module script Ready for Review
#7250 opened Dec 19, 2024 by prototaxites Loading…
5 of 17 tasks
1
Added BBMAP/REPAIR submodule Ready for Review update module
#7249 opened Dec 19, 2024 by mazzalab Loading…
14 tasks done
1
@mazzalab
2
READY FOR REVIEW: Adapt output declarations
#7244 opened Dec 18, 2024 by simoxb Loading…
13 tasks
2
Update gzrt to v0.9.1 update module WIP Work in progress
#7241 opened Dec 18, 2024 by mazzalab Loading…
12 tasks done
1
@mazzalab
5
chore(deps): update github actions
#7239 opened Dec 18, 2024 by renovate bot Loading…
2 tasks
1
initial commit of kma_index new module Adding a new module Ready for Review
#7236 opened Dec 17, 2024 by Krannich479 Loading…
11 of 13 tasks
1
@Krannich479
8
Add functionality for --unknown-slide in spaceranger/count
#7233 opened Dec 17, 2024 by fasterius Loading…
1 task done
9
port mmseqs/tsv2exprofiledb to nf-test
#7232 opened Dec 17, 2024 by famosab Loading…
17 tasks
try porting mmseqs/search to nf-test
#7231 opened Dec 17, 2024 by famosab Loading…
17 tasks
5
added basicpy nftest
#7228 opened Dec 16, 2024 by kbestak Loading…
10 of 14 tasks
1
3
Move Changes action locally
#7223 opened Dec 13, 2024 by edmundmiller • Draft
@edmundmiller
4
DUMMY DELETE ME: Test if UNTAR fails on self_hosted runners
#7216 opened Dec 13, 2024 by jfy133 • Draft
17 tasks
Remove compressed flag from all mmseqs modules
#7211 opened Dec 12, 2024 by jasmezz Loading…
2 of 17 tasks
5
Add nftests custom modules
#7201 opened Dec 11, 2024 by nschcolnicov Loading…
17 tasks
35
Fix minor typos
#7177 opened Dec 8, 2024 by mribeirodantas Loading…
1 of 17 tasks
@mribeirodantas
7
Fix abritamr/run ready to merge
#7176 opened Dec 7, 2024 by sateeshperi Loading…
@sateeshperi
6
Fix cellranger multi handling of crispr data
#7175 opened Dec 6, 2024 by svigneau Loading…
3 tasks done
1
2
Limit Trimgalore to 15 cpus
#7173 opened Dec 6, 2024 by edmundmiller Loading…
@edmundmiller
Update DeepVariant
#7171 opened Dec 6, 2024 by fellen31 Loading…
17 tasks
@fellen31
3
Bcl2fastq bump
#7161 opened Dec 4, 2024 by edmundmiller • Draft
@edmundmiller
Fix stub run trimmomatic
#7160 opened Dec 4, 2024 by kiei-rz Loading…
17 tasks
1
Proovframe update
#7158 opened Dec 4, 2024 by Ge94 Loading…
17 tasks
2
[WIP] Cellranger v9 modules
#7153 opened Dec 4, 2024 by apeltzer Loading…
17 tasks
1
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