New module: mobster

[elena-buscaroli]

PR checklist

Closes #8689

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the module conventions in the contribution docs
• If necessary, include test data in your PR.
• Remove all TODO statements.
• Emit the versions.yml file.
• Follow the naming conventions.
• Follow the parameters requirements.
• Follow the input/output options guidelines.
• Add a resource label
• Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • nf-core modules test <MODULE> --profile docker
    • nf-core modules test <MODULE> --profile singularity
    • nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • nf-core subworkflows test <SUBWORKFLOW> --profile conda

[itrujnara]

Hi, thanks for the contribution. The module is already quite solid. I've left a few technical comments for your consideration.

[itrujnara]

Can you make a Seqera container with the tools? They are more reliable than Biocontainers

[elena-buscaroli]

Hi! thank your for your comment. My lab and I are developing an nf-core pipeline (https://nf-co.re/tumourevo/dev/) and after the first release comments, some of your collegues suggested to use biocontainers for our modules, that's why we proceeded with those. Is it ok or should I update the containers to sequera ones?

[itrujnara]

For a single module, biocontainers should be fine (although I recall some issues with Singularity). However, with multiple, it is much more reliable and convenient to use Seqera Containers instead of mulled biocontainers.

[elena-buscaroli]

Hi @itrujnara! thank you for your comments, I should've addressed all of them (I've left a comment for the Docker/Singularity containers).
I'm currently waiting for the test datastes to be accepted in the nf-core/test-datasets repository. After that (if everything else is now correct) I can create a snapshot and test the module

[itrujnara]

You can consider switching to Seqera Containers for convenience. Otherwise, the module looks fine now.