--soloCBwhitelist option not working #5863
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What module is this an issue for? |
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My bad, this is for the Starsolo module (star/starsolo) |
matq007
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Jul 31, 2024
Whitelist is set as optional because it is only used by `CB_UMI_Simple` and `CB_UMI_Complex`
matq007
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Jul 31, 2024
Whitelist is set as optional because it is only used by `CB_UMI_Simple` and `CB_UMI_Complex`
github-merge-queue bot
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Aug 1, 2024
* fix: wrong stub output files * fix: issue #5863 Whitelist is set as optional because it is only used by `CB_UMI_Simple` and `CB_UMI_Complex` * fix: convert star/starsolo from pytest to nf-test * fix: ignore Summary.csv * revert: Summary.csv works fine on when tested locally * Update snapshot --------- Co-authored-by: Simon Pearce <[email protected]>
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Can be also closed now? @SPPearce |
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Solved in #6062 |
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Have you checked the docs?
Description of the bug
The way --soloCBwhitelist takes an argument does not seem to work because it is written as metadata but the barcode whitelist needs to be in a (value) channel so it can be loaded into the Docker or Singularity container, and a file cannot be part of metadata. Can you fix it, please? Thank you. (I also think that having the solo as either part of the metadata or as a separate value channel in the input would be preferable.)
Command used and terminal output
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Relevant files
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System information
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