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PR checklist
this branch contains all the changes made to the script in the last month, including the subworkflow and deeptools integrations and R comparisons , as well as the addition of a parameter to terminate the analysis after specific steps that can be indicated with a keyboard parameter.
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).