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Rscript integration #3

Merged
merged 14 commits into from
Oct 5, 2023
Merged

Rscript integration #3

merged 14 commits into from
Oct 5, 2023

Commits on Sep 5, 2023

  1. added subworkflow to align with bwa

    @lucidif
    lucidif committed Sep 5, 2023
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Commits on Sep 7, 2023

  1. markduplicates and filtering

    @lucidif
    lucidif committed Sep 7, 2023
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  2. bugfix include removal

    @lucidif
    lucidif committed Sep 7, 2023
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Commits on Sep 12, 2023

  1. add stopAt parameter

    @lucidif
    lucidif committed Sep 12, 2023
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Commits on Sep 13, 2023

  1. deeptools coverage bugfix

    @lucidif
    lucidif committed Sep 13, 2023
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Commits on Sep 21, 2023

  1. docker loading

    @lucidif
    lucidif committed Sep 21, 2023
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Commits on Sep 25, 2023

  1. subworkflow faidx (incomplete)

    @lucidif
    lucidif committed Sep 25, 2023
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Commits on Sep 27, 2023

  1. comparison test (not work with multiple comparison with same sample)

    @lucidif
    lucidif committed Sep 27, 2023
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Commits on Sep 29, 2023

  1. second test for comparison

    @lucidif
    lucidif committed Sep 29, 2023
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Commits on Oct 3, 2023

  1. make comparison channel

    @lucidif
    lucidif committed Oct 3, 2023
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  2. cleaning after comparison channel creation

    @lucidif
    lucidif committed Oct 3, 2023
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Commits on Oct 4, 2023

  1. R mle comparison integration

    @lucidif
    lucidif committed Oct 4, 2023
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Commits on Oct 5, 2023

  1. clear code and add samtools to multiqc

    @lucidif
    lucidif committed Oct 5, 2023
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  2. fixed prettier

    @daisymut
    daisymut committed Oct 5, 2023
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