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allow use of .gz when specifying fast and gtf #313
Labels
enhancement
New feature or request
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This was referenced Apr 2, 2024
Will be fixed as part of #276. |
Just for the gtf of |
10 tasks
Still seems to be an issue in latest release |
#276 has not been merged yet, this will be part of 2.7 |
Should be fixed in 2.7.0. If the issue persists please reopen/make a new ticket. |
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Description of feature
I was trying to run the scrnaseq pipeline specifying a fasta and gtf file. I downloaded from ensembl but they were gunzipped.
I searched Slack and found the same problem I was having and this answer that seems to have worked for me too
https://nfcore.slack.com/archives/CHN5BV5DW/p1706103433405269
I was wondering if it would be possible to allow the use of .gz files like this? I have used the rnaseq pipeline and it allows for the use of gunzipped files. Thanks for this amazing resource!
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