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Releases: nf-core/scrnaseq

2.7.1

15 Aug 06:27
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What's Changed

  • Fix that tests have not been executed with nf-test v0.9 (#359)
  • Add support for 10XV4 chemistry (#348)
  • Fix issues with predefined STAR index (#350)
  • Update modules (#351)
  • Fix resource specifications for cellranger mkref/cellrangerarc mkref (#352)

See also the CHANGELOG.

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Full Changelog: 2.7.0...2.7.1

2.7.0

25 Jun 14:06
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Full Changelog: 2.6.0...2.7.0

2.6.0

07 May 14:17
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Full Changelog: 2.5.1...2.6.0

2.5.1

23 Jan 08:11
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Full Changelog: 2.5.0...2.5.1

nf-core/scrnaseq 2.5.0

10 Jan 07:15
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What's Changed

  • Better support for custom chemistries by @grst in #273
  • Important! Template update for nf-core/tools v2.11.1 by @nf-core-bot in #279
  • Adding cellranger-arc (multiome scRNA-seq + scATAC support) by @heylf in #274
  • increase time limits by @grst in #281
  • Fix time limits by @grst in #284

Full Changelog: https://github.com/nf-core/scrnaseq/blob/dev/CHANGELOG.md#v250---2024-01-02

nf-core/scrnaseq 2.4.1

02 Oct 12:18
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Full Changelog: 2.4.0...2.4.1

nf-core/scrnaseq 2.4.0 - "Lime Platinum Crab"

24 Aug 08:10
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What's Changed

  • Fix typo causing empty version imformation for mtx_conversion subworkflow (#254)
  • Add singularity.registry = 'quay.io' and bump NF version to 23.04.0 (#237)
  • Fixed issue with file collisions while using cellranger (#232)
  • Fix issue where multiqc inputs tried to access objects that did not exist (#239)
  • Removed public_aws_ecr profile (#242)
  • Include cellranger in MultiQC report (#244)
  • Nf-core template update to v2.9 (#245)
  • Update cellranger and fastqc module (#246).
    The updated cellranger module now automatically renames input FASTQ
    files to match the expected naming conventions.

New Contributors

nf-core/scrnaseq v2.3.2 "Sepia Samarium Salmon"

07 Jun 18:50
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This release is focused simply on ensuring as many containers as possible are hosted on quay.io.

What's Changed

Full Changelog: 2.3.1...2.3.2

nf-core/scrnaseq v2.3.1 "Yellow Strontium Pinscher"

02 Jun 08:31
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Full Changelog: 2.3.0...2.3.1

v2.3.0 - 2023-05-03 Steelblue Waspaloy Dachshund

03 May 20:46
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Enhancements & fixes

  • Fix problem on samplesheet check related to amount of columns ([#211])
  • 211 samplesheet error in v220 when more than 3 fields are present by @fmalmeida in #216
  • Remove unused --bustools_correct and --skip_bustools and fix bugs in schema defaults by @drpatelh in #219
  • Fixed bug in starsolo output cardinality by @robsyme in #220

Full Changelog: 2.2.0...2.3.0