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Issues: nf-core/tools
Download: Fix support for Seqera Community Containers
#3179
opened Sep 24, 2024 by
MatthiasZepper
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Deprecate devcontainer.json
good-first-issue
template
nf-core pipeline/component template
#3466
opened Feb 24, 2025 by
kenibrewer
5 tasks
AWS full tests
automation
bug
Something isn't working
high-priority
pipeline-testing
template
nf-core pipeline/component template
Allow nf-core modules lint for pip
enhancement
good-first-issue
#3461
opened Feb 21, 2025 by
maxulysse
For Something isn't working
good-first-issue
bump-version don't consider it an error if test snaps do not contain pipeline version
bug
#3453
opened Feb 14, 2025 by
erikrikarddaniel
Duplicate email entries in rocrate.json generation
bug
Something isn't working
#3452
opened Feb 13, 2025 by
jfy133
Automatically bump version during template update
enhancement
#3449
opened Feb 10, 2025 by
edmundmiller
modules lint can't handle nested environment.yml files
bug
Something isn't working
#3436
opened Jan 31, 2025 by
mashehu
Institutional configs are not included when Something isn't working
NXF_OFFLINE is on
bug
#3430
opened Jan 27, 2025 by
Aratz
PULL_REQUEST_TEMPLATE.md fails files_unchanged linting test depending on local choice of default branch
bug
Something isn't working
#3423
opened Jan 24, 2025 by
alexlyttle
Behaviour of lint check Something isn't working
files_unchanged is different in 3.1.2
bug
#3422
opened Jan 24, 2025 by
awgymer
False positive merge marker failures due to .venv directory
bug
Something isn't working
#3420
opened Jan 22, 2025 by
heuermh
adding Something isn't working
zenodo_release to nf-core.yml does still produce a warning
bug
#3398
opened Jan 15, 2025 by
marrip
nf-core pipelines sync overwrites newly generated Something isn't working
.nf-core.yml content
bug
#3391
opened Jan 9, 2025 by
awgymer
RO-crate content appear in the nf-core lint warning if there is a TODO
bug
Something isn't working
good-first-issue
Add a way to tell the linter to ignore specified directories
enhancement
good-first-issue
linting
#3385
opened Jan 7, 2025 by
zachary-foster
nf-core pipelines download does not work with SSLError
bug
Something isn't working
#3375
opened Dec 25, 2024 by
meng-hhh
Remove hyphens from pipeline names in Nextflow workflows
enhancement
good-first-issue
#3365
opened Dec 18, 2024 by
adamrtalbot
modules lint --fix changes more entries in the meta.yml than expected
bug
#3363
opened Dec 17, 2024 by
famosab
nf-core pipelines rocrate does not know about the contributors field introduced in nextflow.config by Nextflow 24.10.0
bug
#3361
opened Dec 17, 2024 by
charles-plessy
Add beautiful citation directions via CITATION.cff in template
enhancement
#3360
opened Dec 13, 2024 by
d4straub
Pipeline template: only run linting and precommit if only markdown files changed in a PR
enhancement
#3352
opened Dec 12, 2024 by
jfy133
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