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ENH: Add additional environment to tox to run notebooks
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Add an additional environment to `tox` to run notebooks.

Add a new table to `pyproject.toml` to host the `nbconvert` and
`nbclient` dependencies so that the notebooks can be run.
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jhlegarreta committed Nov 9, 2024
1 parent 795a9b7 commit e061416
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Showing 2 changed files with 33 additions and 1 deletion.
5 changes: 5 additions & 0 deletions pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -74,6 +74,11 @@ test = [
"pytest-xdist >= 1.28"
]

notebooks = [
"nbconvert",
"nbclient",
]

antsopt = [
"ConfigSpace",
"smac",
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29 changes: 28 additions & 1 deletion tox.ini
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@
requires =
tox>=4
envlist =
py312
py312, notebooks
skip_missing_interpreters = true

# Configuration that allows us to split tests across GitHub runners effectively
Expand Down Expand Up @@ -38,6 +38,33 @@ commands =
pytest --doctest-modules --cov eddymotion -n auto --cov-report xml \
--junitxml=test-results.xml -v src test {posargs}

[testenv:notebooks]
description = Run notebooks
labels = notebooks
pass_env =
# getpass.getuser() sources for Windows:
LOGNAME
USER
LNAME
USERNAME
# Pass user color preferences through
PY_COLORS
FORCE_COLOR
NO_COLOR
CLICOLOR
CLICOLOR_FORCE
CURBRANCH
GITHUB_ACTIONS
TEST_DATA_HOME
TEST_OUTPUT_DIR
TEST_WORK_DIR
PYTHONHASHSEED
ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS
PATH
extras = notebooks
commands =
python -m nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute docs/notebooks/*

[testenv:docs]
description = Build documentation site
labels = docs
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