MNT: complete transition from flake8/black to ruff (#3279)

.vscode/settings.json

@@ -1,11 +1,9 @@
 {
-    "python.linting.flake8Enabled": true,
     "python.pythonPath": "/usr/local/miniconda/bin/python",
     "restructuredtext.confPath": "${workspaceFolder}/docs",
     "python.testing.pytestEnabled": true,
     "python.testing.unittestEnabled": false,
     "python.testing.nosetestsEnabled": false,
-    "python.linting.enabled": true,
     "python.testing.pytestArgs": [],
-    "python.linting.pylintEnabled": false
+    "editor.defaultFormatter": "charliermarsh.ruff",
 }

Dockerfile_devel

@@ -26,8 +26,8 @@ ENV FMRIPREP_REGRESSION_SOURCE=/tmp/data/fmriprep_bold_truncated \
     FMRIPREP_REGRESSION_REPORTS=/tmp/data/reports \
     FMRIPREP_DEV=1
 
-# use flake8 as linter
-RUN conda install -y flake8
+# use ruff as linter
+RUN conda install -y ruff
 
 RUN mkdir -p /tmp/data
 

pyproject.toml

@@ -57,10 +57,8 @@ doc = [
     "sphinx_rtd_theme>=0.5.2",
 ]
 dev = [
-    "black ~= 22.3.0",
+    "ruff ~= 0.4.3",
     "pre-commit",
-    "isort ~= 5.10.1",
-    "flake8-pyproject",
 ]
 duecredit = ["duecredit"]
 resmon = []
@@ -121,22 +119,9 @@ version-file = "fmriprep/_version.py"
 # Developer tool configurations
 #
 
+# Disable black
 [tool.black]
-line-length = 99
-skip-string-normalization = true
-
-[tool.isort]
-profile = 'black'
-
-[tool.flake8]
-max-line-length = "99"
-doctests = "False"
-exclude = "*build/"
-ignore = ["W503", "E203"]
-per-file-ignores = [
-    "**/__init__.py : F401",
-    "docs/conf.py : E265",
-]
+exclude = ".*"
 
 [tool.pytest.ini_options]
 minversion = "6"