Update OBI import module using ODK's make base option to get proper…

… parents as the base file is not yet pre-reasoned, as it should be (see also: obi-ontology/obi#1815)
nmrML · Aug 21, 2024 · fd1a5e3 · fd1a5e3
1 parent 5f8c927
commit fd1a5e3
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diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -10,7 +10,7 @@
 # More information: https://github.com/INCATools/ontology-development-kit/
 
 # Fingerprint of the configuration file when this Makefile was last generated
-CONFIG_HASH=                063948980a77d2cae11b525e208d573c79ba7ada9bb786ef8519bf6438fdc969
+CONFIG_HASH=                6bdc85a714f6ee8c03d73f3362a5362d0fe4354c253f35c4f4b4b4d4482f0e4a
 
 
 # ----------------------------------------
@@ -455,8 +455,8 @@ mirror-iao: | $(TMPDIR)
 .PHONY: mirror-obi
 .PRECIOUS: $(MIRRORDIR)/obi.owl
 mirror-obi: | $(TMPDIR)
-	curl -L $(OBOBASE)/obi/obi-base.owl --create-dirs -o $(TMPDIR)/obi-download.owl --retry 4 --max-time 200 && \
-	$(ROBOT) convert -i $(TMPDIR)/obi-download.owl -o $(TMPDIR)/$@.owl
+	curl -L $(OBOBASE)/obi.owl --create-dirs -o $(TMPDIR)/obi-download.owl --retry 4 --max-time 200 && \
+	$(ROBOT) remove -i $(TMPDIR)/obi-download.owl --base-iri $(OBOBASE)/OBI --axioms external --preserve-structure false --trim false -o $(TMPDIR)/$@.owl
 
 
 ## ONTOLOGY: chebi