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2283_Cell_types_with_missing_definition #2289

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merged 4 commits into from
Feb 23, 2024
Merged

2283_Cell_types_with_missing_definition #2289

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2283_Cell_types_with_missing_definition
AvolaAmg Feb 22, 2024
9f51578
Update cl-edit.owl
AvolaAmg Feb 22, 2024
22d533e
Updated with new references
AvolaAmg Feb 22, 2024
7df1955
deleted reference PMID:21359760
AvolaAmg Feb 22, 2024
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14 changes: 12 additions & 2 deletions src/ontology/cl-edit.owl
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Expand Up @@ -19532,6 +19532,7 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002578 obo:CL_0002334

# Class: obo:CL_0002579 (omentum preadipocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21484051") obo:IAO_0000115 obo:CL_0002579 "A preadipocyte that is part of an omentum.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_0002579 <https://orcid.org/0000-0003-1980-3228>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002579 "2011-03-03T04:19:42Z")
AnnotationAssertion(rdfs:label obo:CL_0002579 "omentum preadipocyte")
Expand All @@ -19549,6 +19550,7 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002580 obo:CL_0002334

# Class: obo:CL_0002581 (perirenal preadipocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31079959") obo:IAO_0000115 obo:CL_0002581 "A preadipocyte that is part of a perirenal fat tissue.")
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AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_0002581 <https://orcid.org/0000-0003-1980-3228>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002581 "2011-03-03T04:20:04Z")
AnnotationAssertion(rdfs:label obo:CL_0002581 "perirenal preadipocyte")
Expand Down Expand Up @@ -26582,7 +26584,7 @@ EquivalentClasses(obo:CL_1000500 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeV

# Class: obo:CL_1000504 (kidney medulla cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1000504 "A cell that is part of a renal medulla.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:22343825") obo:IAO_0000115 obo:CL_1000504 "A cell that is part of a renal medulla.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000504 "KUPO:0001017")
AnnotationAssertion(rdfs:label obo:CL_1000504 "kidney medulla cell")
EquivalentClasses(obo:CL_1000504 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000362)))
Expand Down Expand Up @@ -26730,6 +26732,7 @@ SubClassOf(obo:CL_1000618 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000230

# Class: obo:CL_1000681 (kidney cortex interstitial cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18575881") obo:IAO_0000115 obo:CL_1000681 "A cell that is part of an interstitial compartment of a renal cortex.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000681 "KUPO:0001091")
AnnotationAssertion(rdfs:label obo:CL_1000681 "kidney cortex interstitial cell")
EquivalentClasses(obo:CL_1000681 ObjectIntersectionOf(obo:CL_1000500 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005270)))
Expand All @@ -26739,6 +26742,7 @@ SubClassOf(obo:CL_1000681 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000527

# Class: obo:CL_1000682 (kidney medulla interstitial cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21359760") obo:IAO_0000115 obo:CL_1000682 "A cell that is part of an interstitum of a renal medulla.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000682 "KUPO:0001092")
AnnotationAssertion(rdfs:label obo:CL_1000682 "kidney medulla interstitial cell")
EquivalentClasses(obo:CL_1000682 ObjectIntersectionOf(obo:CL_1000500 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005211)))
Expand All @@ -26755,6 +26759,7 @@ SubClassOf(obo:CL_1000691 obo:CL_1000500)

# Class: obo:CL_1000692 (kidney interstitial fibroblast)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10559635") obo:IAO_0000115 obo:CL_1000692 "A fibroblast that is part of an interstitial compartment of a kidney.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000692 "KUPO:0001102")
AnnotationAssertion(rdfs:label obo:CL_1000692 "kidney interstitial fibroblast")
EquivalentClasses(obo:CL_1000692 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005215)))
Expand Down Expand Up @@ -26797,6 +26802,7 @@ SubClassOf(obo:CL_1000698 obo:CL_1000500)

# Class: obo:CL_1000699 (kidney resident dendritic cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34843404") obo:IAO_0000115 obo:CL_1000699 "A resident-dendritic cell that is part of a kidney.")
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AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000699 "KUPO:0001110")
AnnotationAssertion(rdfs:label obo:CL_1000699 "kidney resident dendritic cell")
SubClassOf(obo:CL_1000699 obo:CL_0001007)
Expand Down Expand Up @@ -26947,6 +26953,7 @@ SubClassOf(obo:CL_1000768 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000509

# Class: obo:CL_1000803 (kidney inner medulla interstitial cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21359760") obo:IAO_0000115 obo:CL_1000803 "A cell that is located in an interstitial compartment of an inner renal medulla.")
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AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000803 "KUPO:0001093")
AnnotationAssertion(rdfs:label obo:CL_1000803 "kidney inner medulla interstitial cell")
EquivalentClasses(obo:CL_1000803 ObjectIntersectionOf(obo:CL_1000682 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005214)))
Expand All @@ -26956,6 +26963,7 @@ SubClassOf(obo:CL_1000803 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000521

# Class: obo:CL_1000804 (kidney outer medulla interstitial cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21359760") Annotation(oboInOwl:hasDbXref "PMID:8694267") obo:IAO_0000115 obo:CL_1000804 "A kidney cell that is part of an interstitial compartment of an outer renal medulla.")
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AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000804 "KUPO:0001094")
AnnotationAssertion(rdfs:label obo:CL_1000804 "kidney outer medulla interstitial cell")
EquivalentClasses(obo:CL_1000804 ObjectIntersectionOf(obo:CL_1000682 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005213)))
Expand Down Expand Up @@ -27002,6 +27010,7 @@ SubClassOf(obo:CL_1000850 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000233

# Class: obo:CL_1000854 (kidney blood vessel cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34843404") obo:IAO_0000115 obo:CL_1000854 "A blood vessel cell that is part of a kidney.")
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AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000854 "KUPO:0001014")
AnnotationAssertion(rdfs:label obo:CL_1000854 "kidney blood vessel cell")
EquivalentClasses(obo:CL_1000854 ObjectIntersectionOf(obo:CL_1000504 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003517)))
Expand Down Expand Up @@ -27112,8 +27121,9 @@ SubClassOf(obo:CL_1001033 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_001244

# Class: obo:CL_1001036 (vasa recta cell)

AnnotationAssertion(obo:IAO_0000115 obo:CL_1001036 "A cell that is part of a vasa recta.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001036 "KUPO:0001068")
AnnotationAssertion(rdfs:label obo:CL_1001036 "vasa recta cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:12529271") Annotation(oboInOwl:hasDbXref "PMID:24381184") rdfs:label obo:CL_1001036 "vasa recta cell")
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EquivalentClasses(obo:CL_1001036 ObjectIntersectionOf(obo:CL_1000892 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004726)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001036 obo:CL_1000504)
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001036 obo:CL_1000892)
Expand Down
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