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NTR-border-associated-macrophage-and-subclasses #2310

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AvolaAmg
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@AvolaAmg AvolaAmg commented Mar 7, 2024

Fixes #2285

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AvolaAmg commented Mar 7, 2024

@lubianat

@AvolaAmg AvolaAmg self-assigned this Mar 7, 2024
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AvolaAmg commented Mar 7, 2024

#gogoeditdiff

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github-actions bot commented Mar 7, 2024

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
  • Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-03-07/cl-simple.owl
  • Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
  • Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-03-07/cl-simple.owl
  • Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

CD103-positive dendritic cell http://purl.obolibrary.org/obo/CL_0002461

Removed

Added

CD4-positive CD11b-positive dendritic cell http://purl.obolibrary.org/obo/CL_0000999

Removed

Added

CD4-positive, alpha-beta memory T cell, CD45RO-positive http://purl.obolibrary.org/obo/CL_0001204

Added

CD8-positive, alpha-beta memory T cell, CD45RO-positive http://purl.obolibrary.org/obo/CL_0001203

Added

CD8_alpha-negative CD11b-negative dendritic cell http://purl.obolibrary.org/obo/CL_0000998

Removed

Added

CD8_alpha-positive CD11b-negative dendritic cell http://purl.obolibrary.org/obo/CL_0001000

Removed

Added

CL_4042001 http://purl.obolibrary.org/obo/CL_4042001

Added

CL_4042002 http://purl.obolibrary.org/obo/CL_4042002

Added

CL_4042003 http://purl.obolibrary.org/obo/CL_4042003

Added

CL_4042004 http://purl.obolibrary.org/obo/CL_4042004

Added

Langerhans cell http://purl.obolibrary.org/obo/CL_0000453

Removed

Added

adipose dendritic cell http://purl.obolibrary.org/obo/CL_0002462

Removed

Added

band form neutrophil http://purl.obolibrary.org/obo/CL_0000560

Added

blood lymphocyte http://purl.obolibrary.org/obo/CL_4030029

Removed

Added

central nervous system macrophage http://purl.obolibrary.org/obo/CL_0000878

Removed

choroid-plexus macrophage http://purl.obolibrary.org/obo/CL_0000880

Removed

Added

dendritic cell http://purl.obolibrary.org/obo/CL_0000451

Added

elicited macrophage http://purl.obolibrary.org/obo/CL_0000861

Added

epithelioid macrophage http://purl.obolibrary.org/obo/CL_0002150

Added

glomerular mesangial cell http://purl.obolibrary.org/obo/CL_1000742

Removed

immature CD11c-low plasmacytoid dendritic cell http://purl.obolibrary.org/obo/CL_0000992

Removed

Added

immature basophil http://purl.obolibrary.org/obo/CL_0000768

Added

immature conventional dendritic cell http://purl.obolibrary.org/obo/CL_0000840

Removed

Added

immature eosinophil http://purl.obolibrary.org/obo/CL_0000772

Added

immature neutrophil http://purl.obolibrary.org/obo/CL_0000776

Added

leukocyte http://purl.obolibrary.org/obo/CL_0000738

Removed

lung interstitial macrophage http://purl.obolibrary.org/obo/CL_4033043

Removed

lymphocyte http://purl.obolibrary.org/obo/CL_0000542

Removed

Added

macrophage http://purl.obolibrary.org/obo/CL_0000235

Removed

mast cell http://purl.obolibrary.org/obo/CL_0000097

Added

mature CD11c-low plasmacytoid dendritic cell http://purl.obolibrary.org/obo/CL_0000993

Removed

Added

mature basophil http://purl.obolibrary.org/obo/CL_0000043

Added

mature conventional dendritic cell http://purl.obolibrary.org/obo/CL_0000841

Removed

Added

mature eosinophil http://purl.obolibrary.org/obo/CL_0000041

Added

mature neutrophil http://purl.obolibrary.org/obo/CL_0000096

Removed

memory CCR4-positive regulatory T cell http://purl.obolibrary.org/obo/CL_0001046

Added

meningeal macrophage http://purl.obolibrary.org/obo/CL_0000879

Removed

Added

mesenchymal cell http://purl.obolibrary.org/obo/CL_0008019

Removed

Added

monocyte http://purl.obolibrary.org/obo/CL_0000576

Added

mononuclear cell http://purl.obolibrary.org/obo/CL_0000842

Removed

mononuclear osteoclast http://purl.obolibrary.org/obo/CL_0000778

Removed

Added

motile cell http://purl.obolibrary.org/obo/CL_0000219

Removed

motile sperm cell http://purl.obolibrary.org/obo/CL_0011013

Removed

myeloid dendritic cell http://purl.obolibrary.org/obo/CL_0000782

Removed

Added

myeloid leukocyte http://purl.obolibrary.org/obo/CL_0000766

Removed

osteoclast http://purl.obolibrary.org/obo/CL_0000092

Added

perivascular macrophage http://purl.obolibrary.org/obo/CL_0000881

Removed

Added

phagocyte (sensu Vertebrata) http://purl.obolibrary.org/obo/CL_0000518

Removed

plasmacytoid dendritic cell http://purl.obolibrary.org/obo/CL_0000784

Added

type A synovial cell http://purl.obolibrary.org/obo/CL_0002302

Removed

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github-actions bot commented Mar 7, 2024

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
  • Version IRI: None
  • Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
  • Version IRI: None
  • Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

CL_4042001 http://purl.obolibrary.org/obo/CL_4042001

Added

CL_4042002 http://purl.obolibrary.org/obo/CL_4042002

Added

CL_4042003 http://purl.obolibrary.org/obo/CL_4042003

Added

CL_4042004 http://purl.obolibrary.org/obo/CL_4042004

Added

cell http://purl.obolibrary.org/obo/CL_0000000

Removed

central nervous system macrophage http://purl.obolibrary.org/obo/CL_0000878

Removed

choroid-plexus macrophage http://purl.obolibrary.org/obo/CL_0000880

Removed

Added

leukocyte http://purl.obolibrary.org/obo/CL_0000738

Removed

macrophage http://purl.obolibrary.org/obo/CL_0000235

Removed

meningeal macrophage http://purl.obolibrary.org/obo/CL_0000879

Removed

Added

mononuclear cell http://purl.obolibrary.org/obo/CL_0000842

Removed

mononuclear phagocyte http://purl.obolibrary.org/obo/CL_0000113

Removed

motile cell http://purl.obolibrary.org/obo/CL_0000219

Removed

myeloid leukocyte http://purl.obolibrary.org/obo/CL_0000766

Removed

perivascular macrophage http://purl.obolibrary.org/obo/CL_0000881

Removed

Added

phagocyte http://purl.obolibrary.org/obo/CL_0000234

Removed

phagocyte (sensu Vertebrata) http://purl.obolibrary.org/obo/CL_0000518

Removed

tissue-resident macrophage http://purl.obolibrary.org/obo/CL_0000864

Removed

@AvolaAmg AvolaAmg closed this Mar 26, 2024
@anitacaron anitacaron deleted the NTR-border-associated-macrophage-and-subclasses- branch May 20, 2024 15:34
@aleixpuigb aleixpuigb removed their request for review October 31, 2024 16:01
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[NTR] border associated macrophage
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