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NTR protoplasmic astrocytes fibrous astrocytes interlaminar astrocytes #2331

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Apr 15, 2024
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NTR protoplasmic astrocytes fibrous astrocytes interlaminar astrocytes #2331

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NTR protoplasmic astrocytes fibrous astrocytes interlaminar astrocytes
AvolaAmg Apr 9, 2024
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Update cl-edit.owl
AvolaAmg Apr 9, 2024
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AvolaAmg Apr 9, 2024
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AvolaAmg Apr 9, 2024
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AvolaAmg Apr 9, 2024
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AvolaAmg Apr 9, 2024
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Merge branch 'master' into NTR-protoplasmic-astrocyte-fibrous-astrocy…
AvolaAmg Apr 9, 2024
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Update cl-edit.owl
AvolaAmg Apr 15, 2024
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Merge branch 'NTR-protoplasmic-astrocyte-fibrous-astrocyte-interlamin…
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Merge branch 'master' into NTR-protoplasmic-astrocyte-fibrous-astrocy…
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55 changes: 55 additions & 0 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3030,6 +3030,11 @@ Declaration(Class(obo:CL_4042003))
Declaration(Class(obo:CL_4042004))
Declaration(Class(obo:CL_4042005))
Declaration(Class(obo:CL_4042006))
Declaration(Class(obo:CL_4042007))
Declaration(Class(obo:CL_4042008))
Declaration(Class(obo:CL_4042009))
Declaration(Class(obo:CL_4042010))
Declaration(Class(obo:CL_4042011))
Declaration(Class(obo:CP_0000000))
Declaration(Class(obo:CP_0000025))
Declaration(Class(obo:CP_0000027))
Expand Down Expand Up @@ -32022,6 +32027,56 @@ AnnotationAssertion(rdfs:label obo:CL_4042006 "dural macrophage"@en)
SubClassOf(obo:CL_4042006 obo:CL_4042003)
SubClassOf(obo:CL_4042006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002092))

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# Class: obo:CL_4042007 (protoplasmic astrocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:25904839") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37139179") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042007 "An astrocyte with highly branched protrusions, found in neocortex layers 2-6. It is involved with the formation and elimination of synapses, glutamate clearance, modulation of synaptic functions and regulation of blood flow in response to synaptic activity.")
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AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4042007 <https://orcid.org/0000-0002-0098-8958>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4042007 "2024-04-08T16:01:24Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:20012068") rdfs:comment obo:CL_4042007 "This astrocyte extends its branches to several hundred of dendrites to multiple neurons to envelope 100,000 or more synapses. In humans, a protoplasmic astrocyte has an average diameter of 142 µm, and its diameter ranges between 100 and 400 µm. In rodents the average diameter of a protoplasmic astrocites is 56 µm.")
AnnotationAssertion(rdfs:label obo:CL_4042007 "protoplasmic astrocyte"@en)
SubClassOf(obo:CL_4042007 obo:CL_0002605)
SubClassOf(obo:CL_4042007 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001950))
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SubClassOf(obo:CL_4042007 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001950))

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# Class: obo:CL_4042008 (fibrous astrocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:22144298") Annotation(oboInOwl:hasDbXref "PMID:28280934") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:34616062") obo:IAO_0000115 obo:CL_4042008 "A cell type located in the first layer of the neocortex with radial protrusions extending transversely into the deeper cortex layers, herby facilitating communication across neurons, astrocytes, capillaries, meninges and cerebrospinal fluid through contact with neurons, pia mater and capillaries.")
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I would suggest to change "A cell type..." to "An astrocyte..."

AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4042008 <https://orcid.org/0000-0002-0098-8958>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4042008 "2024-04-08T16:29:28Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28280934") rdfs:comment obo:CL_4042008 "In humans, a fibrous astrocyte diameter is circa 182 µm. In rodents, a fibrous astrocyte diameter is circa 85 µm.")
AnnotationAssertion(rdfs:label obo:CL_4042008 "fibrous astrocyte"@en)
SubClassOf(obo:CL_4042008 obo:CL_0000127)
SubClassOf(obo:CL_4042008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002316))
SubClassOf(obo:CL_4042008 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002316))

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# Class: obo:CL_4042009 (interlaminar astrocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042009 "An astrocyte type that presents radial protrusions across the layers of a cortex. The soma of this astrocyte is part of the first layer of a neocortex. This astrocyte extents its protrusions transversally to the deeper layers of a cortex and it creates contact with neurons, the pia matter and capillaries. This astrocyte is involved in facilitating the communication across neurons, astrocytes, capillaries, meninges and the cerebrospinal fluid.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4042009 <https://orcid.org/0000-0002-0098-8958>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4042009 "2024-04-08T16:33:45Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042009 "ILA")
AnnotationAssertion(rdfs:label obo:CL_4042009 "interlaminar astrocyte"@en)
SubClassOf(obo:CL_4042009 obo:CL_0002605)
SubClassOf(obo:CL_4042009 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001950))
SubClassOf(obo:CL_4042009 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001950))

# Class: obo:CL_4042010 (pial interlaminar astrocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:37139179") obo:IAO_0000115 obo:CL_4042010 "An interlaminar astrocyte whose soma is part of the first layer of a neocortex and is in contact with a pia surface.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4042010 <https://orcid.org/0000-0002-0098-8958>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4042010 "2024-04-08T16:37:57Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_4042010 "pial interlaminar astrocyte"@en)
SubClassOf(obo:CL_4042010 obo:CL_4042009)

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# Class: obo:CL_4042011 (subpial interlaminar astrocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:37139179") obo:IAO_0000115 obo:CL_4042011 "An interlaminar astrocyte type whose soma is part of the upper first layer of the neocortex and its processes extend to a pia surface.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4042011 <https://orcid.org/0000-0002-0098-8958>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4042011 "2024-04-08T16:39:09Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_4042011 "subpial interlaminar astrocyte"@en)
SubClassOf(obo:CL_4042011 obo:CL_4042009)
SubClassOf(obo:CL_4042011 ObjectSomeValuesFrom(obo:RO_0002170 obo:UBERON_0002361))

# Class: obo:CP_0000000 (obsolete CP:0000000)

AnnotationAssertion(obo:IAO_0100001 obo:CP_0000000 obo:CL_0017500)
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