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Revise endometrial ciliated epithelial cells classification and add links to GO terms #2440

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merged 10 commits into from
Jul 24, 2024
Merged

Revise endometrial ciliated epithelial cells classification and add links to GO terms #2440

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f946491
An ongoing PR - Clean up ciliated epithelial cells hierarchy and link…
Caroline-99 Jul 18, 2024
4dad5f9
Updated logical and textual definition of endometrial ciliated epithe…
Caroline-99 Jul 22, 2024
7e9dff3
Update cl-edit.owl
Caroline-99 Jul 22, 2024
3c3206b
Merge branch 'master' into 2305-links-to-GO-terms-for-types-of-cilia-…
Caroline-99 Jul 22, 2024
c7d8985
Updated textual defs
Caroline-99 Jul 22, 2024
f12b2fd
Merge branch '2305-links-to-GO-terms-for-types-of-cilia-and-villi' of…
Caroline-99 Jul 22, 2024
36a451a
Revert "An ongoing PR - Clean up ciliated epithelial cells hierarchy …
aleixpuigb Jul 23, 2024
dd1fbe8
Updated logical and textual defs
Caroline-99 Jul 24, 2024
fc37ef9
DOI updated
Caroline-99 Jul 24, 2024
e1d5866
Update cl-edit.owl
Caroline-99 Jul 24, 2024
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9 changes: 5 additions & 4 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3073,6 +3073,7 @@ Declaration(Class(obo:GO_0042599))
Declaration(Class(obo:GO_0044316))
Declaration(Class(obo:GO_0070278))
Declaration(Class(obo:GO_0070483))
Declaration(Class(obo:GO_0097729))
Declaration(Class(obo:NCBITaxon_4896))
Declaration(Class(obo:NCBITaxon_6157))
Declaration(Class(obo:NCBITaxon_6237))
Expand Down Expand Up @@ -30947,27 +30948,27 @@ SubClassOf(obo:CL_4030039 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070006))

# Class: obo:CL_4030040 (endometrial ciliated epithelial cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41591-020-1040-z") Annotation(oboInOwl:hasDbXref "https://www.proteinatlas.org/humanproteome/single+cell+type/Glandular+epithelial+cells#endometrialciliatedcells") obo:IAO_0000115 obo:CL_4030040 "A ciliated cell of the endometrial epithelium. The cilia of this cell type help move mucus from glandular tissue of the endometrium.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31290979") Annotation(oboInOwl:hasDbXref "PMID:37999981") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41591-020-1040-z") Annotation(oboInOwl:hasDbXref "https://www.proteinatlas.org/humanproteome/single+cell+type/Glandular+epithelial+cells#endometrialciliatedcells") Annotation(oboInOwl:hasDbXref "doi:10.1016/j.coemr.2024.100503") obo:IAO_0000115 obo:CL_4030040 "A multi-ciliated cell of the endometrial epithelium. This cell is characterized by the presence of 9+2 motile cilia on its apical surface, which facilitates the movement of mucus across the endometrial surface.")
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AnnotationAssertion(terms:date obo:CL_4030040 "2023-02-09T11:25:14Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_4030040 "ciliated cell of the uterus")
AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_4030040 "uterine ciliated cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030040 "ciliated cell of the endometrium")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030040 "endometrium ciliated epithelial cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ttps://www.nature.com/articles/s41591-020-1040-z") rdfs:comment obo:CL_4030040 "In human samples, the expression of FOXJ1 protein, a regulator for motile cilia with epithelial lineage identity, has been noted.")
AnnotationAssertion(rdfs:label obo:CL_4030040 "endometrial ciliated epithelial cell")
EquivalentClasses(obo:CL_4030040 ObjectIntersectionOf(obo:CL_0000064 obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004811)))
EquivalentClasses(obo:CL_4030040 ObjectIntersectionOf(obo:CL_0005012 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004811) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0097729)))
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# Class: obo:CL_4030041 (luminal endometrial ciliated epithelial cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41591-020-1040-z") obo:IAO_0000115 obo:CL_4030041 "A ciliated cell of the endometrial luminal epithelium.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41591-020-1040-z") obo:IAO_0000115 obo:CL_4030041 "A ciliated cell of the endometrial luminal epithelium. This cell is characterized by the presence of motile cilia on its apical surface.")
AnnotationAssertion(terms:date obo:CL_4030041 "2023-02-09T11:34:42Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_4030041 "luminal endometrial ciliated epithelial cell")
SubClassOf(obo:CL_4030041 obo:CL_4030040)
SubClassOf(obo:CL_4030041 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0011949))

# Class: obo:CL_4030042 (glandular endometrial ciliated epithelial cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41591-020-1040-z") obo:IAO_0000115 obo:CL_4030042 "A ciliated cell of the endometrial glandular epithelium.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41591-020-1040-z") obo:IAO_0000115 obo:CL_4030042 "A ciliated cell of the endometrial glandular epithelium. This cell is characterized by the presence of motile cilia on its apical surface.")
AnnotationAssertion(terms:date obo:CL_4030042 "2023-02-09T11:37:30Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_4030042 "glandular endometrial ciliated epithelial cell")
SubClassOf(obo:CL_4030042 obo:CL_4030040)
Expand Down
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