Fixes #2855 NTR limbal epithelial stem cell

[aleixpuigb]

Fixes #2855 NTR limbal epithelial stem cell

[aleixpuigb]

Unfortunately the branch was not created from master.

[aleixpuigb]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-12-11/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-12-11/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

UBERON_0000482 http://purl.obolibrary.org/obo/UBERON_0000482

Added

• Class: UBERON_0000482

UBERON_0006761 http://purl.obolibrary.org/obo/UBERON_0006761

Added

• Class: UBERON_0006761

limbal epithelial stem cell of cornea http://purl.obolibrary.org/obo/CL_4033093

Added

• limbal epithelial stem cell of cornea hasExactSynonym "limbal stem cell"

  • hasDbXref "PMID:17562792"

• limbal epithelial stem cell of cornea hasExactSynonym "limbal epithelial stem cell"

  • hasDbXref "PMID:20614614"

• limbal epithelial stem cell of cornea label "limbal epithelial stem cell of cornea"

• limbal epithelial stem cell of cornea contributor 0000-0001-7655-4833

• limbal epithelial stem cell of cornea date "2024-12-11T13:59:19Z"^^dateTime

• limbal epithelial stem cell of cornea hasRelatedSynonym "LSC"

  • hasDbXref "PMID:36983561"

  • hasSynonymType OMO_0003000

• limbal epithelial stem cell of cornea hasRelatedSynonym "LESC"

  • hasDbXref "PMID:20614614"

  • hasSynonymType OMO_0003000

• limbal epithelial stem cell of cornea contributor 0000-0001-6677-8489

• limbal epithelial stem cell of cornea IAO_0000115 "A stem cell that is part of the corneo-scleral limbus. This cell type resides at the basal layer of the epithelium and has a small size and high nuclear to cytoplasmatic ratio (Secker and Daniels, 2009). A limbal stem cell is responsible for corneal epithelial renewal and repair (Li et al., 2023), and to help maintain a clear corneal surface by preventing conjunctival epithelial cells from migrating onto the cornea (Wang et al., 2023)."

  • hasDbXref "PMID:29105366"

  • hasDbXref "PMID:37768272"

  • hasDbXref "PMID:20614614"

  • hasDbXref "PMID:36983561"

• Class: limbal epithelial stem cell of cornea

• limbal epithelial stem cell of cornea EquivalentTo stem cell and (BFO_0000050 some UBERON_0006761)

• limbal epithelial stem cell of cornea SubClassOf stem cell

• limbal epithelial stem cell of cornea SubClassOf BFO_0000050 some UBERON_0000482

• limbal epithelial stem cell of cornea SubClassOf BFO_0000050 some UBERON_0006761

• limbal epithelial stem cell of cornea SubClassOf RO_0002203 some corneal epithelial cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

UBERON_0000482 http://purl.obolibrary.org/obo/UBERON_0000482

Added

• Class: UBERON_0000482

limbal epithelial stem cell of cornea http://purl.obolibrary.org/obo/CL_4033093

Added

• limbal epithelial stem cell of cornea has exact synonym "limbal stem cell"

  • database_cross_reference "PMID:17562792"

• limbal epithelial stem cell of cornea has exact synonym "limbal epithelial stem cell"

  • database_cross_reference "PMID:20614614"

• limbal epithelial stem cell of cornea label "limbal epithelial stem cell of cornea"

• limbal epithelial stem cell of cornea contributor 0000-0001-7655-4833

• limbal epithelial stem cell of cornea date "2024-12-11T13:59:19Z"^^dateTime

• limbal epithelial stem cell of cornea has_related_synonym "LSC"

  • has_synonym_type abbreviation

  • database_cross_reference "PMID:36983561"

• limbal epithelial stem cell of cornea has_related_synonym "LESC"

  • has_synonym_type abbreviation

  • database_cross_reference "PMID:20614614"

• limbal epithelial stem cell of cornea contributor 0000-0001-6677-8489

• limbal epithelial stem cell of cornea definition "A stem cell that is part of the corneo-scleral limbus. This cell type resides at the basal layer of the epithelium and has a small size and high nuclear to cytoplasmatic ratio (Secker and Daniels, 2009). A limbal stem cell is responsible for corneal epithelial renewal and repair (Li et al., 2023), and to help maintain a clear corneal surface by preventing conjunctival epithelial cells from migrating onto the cornea (Wang et al., 2023)."

  • database_cross_reference "PMID:37768272"

  • database_cross_reference "PMID:29105366"

  • database_cross_reference "PMID:36983561"

  • database_cross_reference "PMID:20614614"

• Class: limbal epithelial stem cell of cornea

• limbal epithelial stem cell of cornea EquivalentTo stem cell and (part of some corneo-scleral junction)

• limbal epithelial stem cell of cornea SubClassOf part of some UBERON_0000482

• limbal epithelial stem cell of cornea SubClassOf develops into some corneal epithelial cell

Comment has been addressed