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Fixes #2855 NTR limbal epithelial stem cell #2857

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1323caf
Update cl-edit.owl
dosumis Oct 17, 2024
0712a44
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
dosumis Oct 17, 2024
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Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
dosumis Oct 28, 2024
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Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
dosumis Oct 31, 2024
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Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
Caroline-99 Oct 31, 2024
7bc48d3
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
Caroline-99 Nov 4, 2024
6660de1
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
Caroline-99 Nov 7, 2024
7cc1c84
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
aleixpuigb Nov 11, 2024
5164f0a
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
Caroline-99 Nov 14, 2024
e7d5723
Update cl-edit.owl
dosumis Nov 15, 2024
5822d1d
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
Caroline-99 Nov 21, 2024
8623c27
Update cl-edit.owl
Caroline-99 Nov 21, 2024
ba26df9
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
Caroline-99 Nov 25, 2024
97f9175
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
Caroline-99 Nov 28, 2024
67c2740
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
Caroline-99 Dec 5, 2024
e1648c3
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
Caroline-99 Dec 5, 2024
6fe231c
Update cl-edit.owl
Caroline-99 Dec 5, 2024
1069960
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
Caroline-99 Dec 5, 2024
f0e72d3
Fixes #2674 #2825
Caroline-99 Dec 6, 2024
fb1f929
Update cl-edit.owl
Caroline-99 Dec 6, 2024
507df8d
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
Caroline-99 Dec 6, 2024
06e7532
Update cl-edit.owl
dosumis Dec 9, 2024
cb91a60
Merge branch 'master' into separating_gut_meosthelial_from_gut_lining
aleixpuigb Dec 9, 2024
562ed34
Fixed 'early colonocyte'
aleixpuigb Dec 10, 2024
920bf8a
Fixes #2855 NTR limbal epithelial stem cell
aleixpuigb Dec 11, 2024
19862a1
Merge branch 'master' into 2855_NTR_limbal_epithelial_cell_cornea
aleixpuigb Dec 11, 2024
16a39b6
Merge branch 'master' into 2855_NTR_limbal_epithelial_cell_cornea
aleixpuigb Dec 16, 2024
fc18777
Merge branch 'master' into 2855_NTR_limbal_epithelial_cell_cornea
Caroline-99 Dec 17, 2024
6734351
Add SubclassOf 'epithelial fate stem cell'
aleixpuigb Dec 17, 2024
5cc368c
Merge branch 'master' into 2855_NTR_limbal_epithelial_cell_cornea
Caroline-99 Dec 17, 2024
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17 changes: 17 additions & 0 deletions src/ontology/cl-edit.owl
Original file line number Diff line number Diff line change
Expand Up @@ -3046,6 +3046,7 @@ Declaration(Class(obo:CL_4033088))
Declaration(Class(obo:CL_4033089))
Declaration(Class(obo:CL_4033090))
Declaration(Class(obo:CL_4033091))
Declaration(Class(obo:CL_4033093))
Declaration(Class(obo:CL_4040000))
Declaration(Class(obo:CL_4040001))
Declaration(Class(obo:CL_4040002))
Expand Down Expand Up @@ -3241,6 +3242,7 @@ Declaration(Class(obo:UBERON_0000156))
Declaration(Class(obo:UBERON_0000157))
Declaration(Class(obo:UBERON_0000371))
Declaration(Class(obo:UBERON_0000424))
Declaration(Class(obo:UBERON_0000482))
Declaration(Class(obo:UBERON_0001004))
Declaration(Class(obo:UBERON_0001335))
Declaration(Class(obo:UBERON_0001786))
Expand Down Expand Up @@ -32369,6 +32371,21 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37124720") oboInOwl:hasE
AnnotationAssertion(rdfs:label obo:CL_4033091 "glycinergic-GABAergic amacrine cell")
EquivalentClasses(obo:CL_4033091 ObjectIntersectionOf(obo:CL_0000561 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061537)))

# Class: obo:CL_4033093 (limbal epithelial stem cell of cornea)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20614614") Annotation(oboInOwl:hasDbXref "PMID:29105366") Annotation(oboInOwl:hasDbXref "PMID:36983561") Annotation(oboInOwl:hasDbXref "PMID:37768272") obo:IAO_0000115 obo:CL_4033093 "A stem cell that is part of the corneo-scleral limbus. This cell type resides at the basal layer of the epithelium and has a small size and high nuclear to cytoplasmatic ratio (Secker and Daniels, 2009). A limbal stem cell is responsible for corneal epithelial renewal and repair (Li et al., 2023), and to help maintain a clear corneal surface by preventing conjunctival epithelial cells from migrating onto the cornea (Wang et al., 2023).")
AnnotationAssertion(terms:contributor obo:CL_4033093 <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(terms:contributor obo:CL_4033093 <https://orcid.org/0000-0001-7655-4833>)
AnnotationAssertion(terms:date obo:CL_4033093 "2024-12-11T13:59:19Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20614614") oboInOwl:hasExactSynonym obo:CL_4033093 "limbal epithelial stem cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:17562792") oboInOwl:hasExactSynonym obo:CL_4033093 "limbal stem cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20614614") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033093 "LESC")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36983561") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033093 "LSC")
AnnotationAssertion(rdfs:label obo:CL_4033093 "limbal epithelial stem cell of cornea")
EquivalentClasses(obo:CL_4033093 ObjectIntersectionOf(obo:CL_0000034 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006761)))
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SubClassOf(obo:CL_4033093 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000482))
SubClassOf(obo:CL_4033093 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000575))

# Class: obo:CL_4040000 (glial restricted tripotential precursor cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10719353") obo:IAO_0000115 obo:CL_4040000 "A glial precursor cell that generates oligodendrocytes and type-1 and type-2 astrocytes. It has been shown in some mammals that this cell type may express A2B5, nestin, FGFR-1, FGFR-2, FGFR-3, PLP, and DM-20 antigens. Unlike oligodendrocyte precursor cell, it does not initially express PDGFR-alpha and can differentiate into both type-1 and type-2 astrocytes.")
Expand Down
3 changes: 2 additions & 1 deletion src/ontology/imports/uberon_terms.txt
Original file line number Diff line number Diff line change
Expand Up @@ -59,4 +59,5 @@ UBERON:0013740
UBERON:0012186
UBERON:0000156
UBERON:0000157
UBERON:0003884
UBERON:0003884
UBERON:0000482
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