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New release. #124
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cmungall committed Oct 24, 2016
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31 changes: 29 additions & 2 deletions ro.obo
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
format-version: 1.2
data-version: releases/2016-09-02
data-version: releases/2016-10-24
subsetdef: ro-eco ""
subsetdef: RO:0002259 ""
remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0]
Expand Down Expand Up @@ -1735,6 +1735,7 @@ property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relati
property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string
holds_over_chain: RO:0002230 RO:0002212
is_a: RO:0002211 ! regulates
is_a: RO:0002305 ! causally upstream of, negative effect
inverse_of: RO:0002335 ! negatively regulated by

[Typedef]
Expand All @@ -1747,6 +1748,7 @@ property_value: IAO:0000589 "positively regulates (process to process)" xsd:stri
holds_over_chain: RO:0002212 RO:0002212
holds_over_chain: RO:0002230 RO:0002213
is_a: RO:0002211 ! regulates
is_a: RO:0002304 ! causally upstream of, positive effect
inverse_of: RO:0002336 ! positively regulated by

[Typedef]
Expand Down Expand Up @@ -2171,7 +2173,7 @@ id: RO:0002263
name: acts upstream of
def: "c involved in regulation of p if c enables 'p' and p' causally upstream of p" []
holds_over_chain: RO:0002327 RO:0002411
is_a: RO:0002500 ! causal agent in
is_a: RO:0002264 ! acts upstream of or within

[Typedef]
id: RO:0002264
Expand Down Expand Up @@ -2243,6 +2245,15 @@ property_value: IAO:0000117 "Chris Mungall" xsd:string
property_value: IAO:0000232 "May be merged into parent relation" xsd:string
is_a: RO:0002552 ! results in ending of

[Typedef]
id: RO:0002302
name: is treated by substance
def: "Inverse of 'is substance that treats'" []
subset: RO:0002259
property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string
is_a: RO:0002410 ! causally related to
inverse_of: RO:0002606 ! is substance that treats

[Typedef]
id: RO:0002303
name: has habitat
Expand All @@ -2257,6 +2268,20 @@ domain: CARO:0000006 ! material anatomical entity
range: ENVO:01000254 ! environmental system
is_a: RO:0002321 ! ecologically related to

[Typedef]
id: RO:0002304
name: causally upstream of, positive effect
comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y
property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string
is_a: RO:0002411 ! causally upstream of

[Typedef]
id: RO:0002305
name: causally upstream of, negative effect
comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y
property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string
is_a: RO:0002411 ! causally upstream of

[Typedef]
id: RO:0002312
name: evolutionary variant of
Expand Down Expand Up @@ -3012,6 +3037,7 @@ def: "c involved in regulation of p if c is involved in some 'p' and p' regulate
property_value: IAO:0000117 "Chris Mungall" xsd:string
holds_over_chain: RO:0002327 RO:0002211
holds_over_chain: RO:0002331 RO:0002211
is_a: RO:0002263 ! acts upstream of
is_a: RO:0002431 ! involved in or involved in regulation of

[Typedef]
Expand All @@ -3036,6 +3062,7 @@ name: involved in or involved in regulation of
def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" []
property_value: IAO:0000117 "Chris Mungall" xsd:string
property_value: IAO:0000118 "involved in or reguates" xsd:string
is_a: RO:0002264 ! acts upstream of or within
is_a: RO:0002328 ! functionally related to
is_a: RO:0002500 ! causal agent in

Expand Down
45 changes: 42 additions & 3 deletions ro.owl
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@
xmlns:cito="http://purl.org/spar/cito/"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ro.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2016-09-02/ro.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2016-10-24/ro.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/annotations.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/pato_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/temporal-intervals.owl"/>
Expand Down Expand Up @@ -2336,6 +2336,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.</obo:I

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002212">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002211"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002305"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002335"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002230"/>
Expand All @@ -2355,6 +2356,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.</obo:I

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002213">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002211"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002304"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002336"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002212"/>
Expand Down Expand Up @@ -2971,7 +2973,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.</obo:I
<!-- http://purl.obolibrary.org/obo/RO_0002263 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002263">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002500"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002264"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002411"/>
Expand Down Expand Up @@ -3189,6 +3191,19 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.</obo:I



<!-- http://purl.obolibrary.org/obo/RO_0002302 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002302">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002410"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002606"/>
<obo:IAO_0000115>Inverse of &apos;is substance that treats&apos;</obo:IAO_0000115>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</dc:creator>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/RO_0002259"/>
<rdfs:label>is treated by substance</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0002303 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002303">
Expand All @@ -3209,6 +3224,28 @@ where



<!-- http://purl.obolibrary.org/obo/RO_0002304 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002304">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</dc:creator>
<rdfs:comment>holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y</rdfs:comment>
<rdfs:label>causally upstream of, positive effect</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0002305 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002305">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</dc:creator>
<rdfs:comment>holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y</rdfs:comment>
<rdfs:label>causally upstream of, negative effect</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0002312 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002312">
Expand Down Expand Up @@ -4398,6 +4435,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different
<!-- http://purl.obolibrary.org/obo/RO_0002428 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002428">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002263"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002431"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
Expand Down Expand Up @@ -4453,6 +4491,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different
<!-- http://purl.obolibrary.org/obo/RO_0002431 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002431">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002264"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002328"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002500"/>
<obo:IAO_0000115>c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p</obo:IAO_0000115>
Expand Down Expand Up @@ -7515,5 +7554,5 @@ Environments include natural environments or exposures, experimentally applied c



<!-- Generated by the OWL API (version 4.2.5) https://github.com/owlcs/owlapi -->
<!-- Generated by the OWL API (version 4.2.6) https://github.com/owlcs/owlapi -->

31 changes: 29 additions & 2 deletions src/ontology/ro.obo
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
format-version: 1.2
data-version: releases/2016-09-02
data-version: releases/2016-10-24
subsetdef: ro-eco ""
subsetdef: RO:0002259 ""
remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0]
Expand Down Expand Up @@ -1735,6 +1735,7 @@ property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relati
property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string
holds_over_chain: RO:0002230 RO:0002212
is_a: RO:0002211 ! regulates
is_a: RO:0002305 ! causally upstream of, negative effect
inverse_of: RO:0002335 ! negatively regulated by

[Typedef]
Expand All @@ -1747,6 +1748,7 @@ property_value: IAO:0000589 "positively regulates (process to process)" xsd:stri
holds_over_chain: RO:0002212 RO:0002212
holds_over_chain: RO:0002230 RO:0002213
is_a: RO:0002211 ! regulates
is_a: RO:0002304 ! causally upstream of, positive effect
inverse_of: RO:0002336 ! positively regulated by

[Typedef]
Expand Down Expand Up @@ -2171,7 +2173,7 @@ id: RO:0002263
name: acts upstream of
def: "c involved in regulation of p if c enables 'p' and p' causally upstream of p" []
holds_over_chain: RO:0002327 RO:0002411
is_a: RO:0002500 ! causal agent in
is_a: RO:0002264 ! acts upstream of or within

[Typedef]
id: RO:0002264
Expand Down Expand Up @@ -2243,6 +2245,15 @@ property_value: IAO:0000117 "Chris Mungall" xsd:string
property_value: IAO:0000232 "May be merged into parent relation" xsd:string
is_a: RO:0002552 ! results in ending of

[Typedef]
id: RO:0002302
name: is treated by substance
def: "Inverse of 'is substance that treats'" []
subset: RO:0002259
property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string
is_a: RO:0002410 ! causally related to
inverse_of: RO:0002606 ! is substance that treats

[Typedef]
id: RO:0002303
name: has habitat
Expand All @@ -2257,6 +2268,20 @@ domain: CARO:0000006 ! material anatomical entity
range: ENVO:01000254 ! environmental system
is_a: RO:0002321 ! ecologically related to

[Typedef]
id: RO:0002304
name: causally upstream of, positive effect
comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y
property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string
is_a: RO:0002411 ! causally upstream of

[Typedef]
id: RO:0002305
name: causally upstream of, negative effect
comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y
property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string
is_a: RO:0002411 ! causally upstream of

[Typedef]
id: RO:0002312
name: evolutionary variant of
Expand Down Expand Up @@ -3012,6 +3037,7 @@ def: "c involved in regulation of p if c is involved in some 'p' and p' regulate
property_value: IAO:0000117 "Chris Mungall" xsd:string
holds_over_chain: RO:0002327 RO:0002211
holds_over_chain: RO:0002331 RO:0002211
is_a: RO:0002263 ! acts upstream of
is_a: RO:0002431 ! involved in or involved in regulation of

[Typedef]
Expand All @@ -3036,6 +3062,7 @@ name: involved in or involved in regulation of
def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" []
property_value: IAO:0000117 "Chris Mungall" xsd:string
property_value: IAO:0000118 "involved in or reguates" xsd:string
is_a: RO:0002264 ! acts upstream of or within
is_a: RO:0002328 ! functionally related to
is_a: RO:0002500 ! causal agent in

Expand Down
45 changes: 42 additions & 3 deletions src/ontology/ro.owl
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@
xmlns:cito="http://purl.org/spar/cito/"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ro.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2016-09-02/ro.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2016-10-24/ro.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/annotations.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/pato_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/temporal-intervals.owl"/>
Expand Down Expand Up @@ -2336,6 +2336,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.</obo:I

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002212">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002211"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002305"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002335"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002230"/>
Expand All @@ -2355,6 +2356,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.</obo:I

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002213">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002211"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002304"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002336"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002212"/>
Expand Down Expand Up @@ -2971,7 +2973,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.</obo:I
<!-- http://purl.obolibrary.org/obo/RO_0002263 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002263">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002500"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002264"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002411"/>
Expand Down Expand Up @@ -3189,6 +3191,19 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.</obo:I



<!-- http://purl.obolibrary.org/obo/RO_0002302 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002302">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002410"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002606"/>
<obo:IAO_0000115>Inverse of &apos;is substance that treats&apos;</obo:IAO_0000115>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</dc:creator>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/RO_0002259"/>
<rdfs:label>is treated by substance</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0002303 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002303">
Expand All @@ -3209,6 +3224,28 @@ where



<!-- http://purl.obolibrary.org/obo/RO_0002304 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002304">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</dc:creator>
<rdfs:comment>holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y</rdfs:comment>
<rdfs:label>causally upstream of, positive effect</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0002305 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002305">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</dc:creator>
<rdfs:comment>holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y</rdfs:comment>
<rdfs:label>causally upstream of, negative effect</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0002312 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002312">
Expand Down Expand Up @@ -4398,6 +4435,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different
<!-- http://purl.obolibrary.org/obo/RO_0002428 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002428">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002263"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002431"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
Expand Down Expand Up @@ -4453,6 +4491,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different
<!-- http://purl.obolibrary.org/obo/RO_0002431 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002431">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002264"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002328"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002500"/>
<obo:IAO_0000115>c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p</obo:IAO_0000115>
Expand Down Expand Up @@ -7515,5 +7554,5 @@ Environments include natural environments or exposures, experimentally applied c



<!-- Generated by the OWL API (version 4.2.5) https://github.com/owlcs/owlapi -->
<!-- Generated by the OWL API (version 4.2.6) https://github.com/owlcs/owlapi -->

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