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Update README.md
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lbeckman314 authored Oct 11, 2024
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14 changes: 7 additions & 7 deletions deployments/kubernetes/README.md
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Expand Up @@ -16,7 +16,7 @@ Kuberenetes Resources:

## 1. Create a Service:

> *[funnel-service.yml](./funnel-service.yml)*
> *[funnel-service.yml](https://github.com/ohsu-comp-bio/funnel/blob/develop/deployments/kubernetes/funnel-service.yml)*
```sh
kubectl apply -f funnel-service.yml
Expand All @@ -32,11 +32,11 @@ Use this value to configure the server hostname of the worker config.

## 2. Create Funnel config files

> *[funnel-server-config.yml](./funnel-server-config.yml)*
> *[funnel-server-config.yml](https://github.com/ohsu-comp-bio/funnel/blob/develop/deployments/kubernetes/funnel-server-config.yml)*
We recommend setting `DisableJobCleanup` to `true` for debugging - otherwise failed jobs will be cleanup up.

> *[funnel-worker-config.yml](./funnel-worker-config.yml)*
> *[funnel-worker-config.yml](https://github.com/ohsu-comp-bio/funnel/blob/develop/deployments/kubernetes/funnel-worker-config.yml)*
***Remember to modify the file to have the actual server hostname.***

Expand All @@ -50,9 +50,9 @@ kubectl create configmap funnel-config --from-file=funnel-server-config.yml --fr

Define a Role and RoleBinding:

> *[role.yml](./role.yml)*
> *[role.yml](https://github.com/ohsu-comp-bio/funnel/blob/develop/deployments/kubernetes/role.yml)*
> *[role_binding.yml](./role_binding.yml)*
> *[role_binding.yml](https://github.com/ohsu-comp-bio/funnel/blob/develop/deployments/kubernetes/role_binding.yml)*
```sh
kubectl create serviceaccount funnel-sa --namespace default
Expand All @@ -64,15 +64,15 @@ kubectl apply -f role_binding.yml

Define a PVC for storage:

> *[funnel-storage-pvc.yml](./funnel-storage-pvc.yml)*
> *[funnel-storage-pvc.yml](https://github.com/ohsu-comp-bio/funnel/blob/develop/deployments/kubernetes/funnel-storage-pvc.yml)*
```sh
kubectl apply -f funnel-storage-pvc.yml
```

## 6. Create a Deployment

> *[funnel-deployment.yml](./funnel-deployment.yml)*
> *[funnel-deployment.yml](https://github.com/ohsu-comp-bio/funnel/blob/develop/deployments/kubernetes/funnel-deployment.yml)*
```sh
kubectl apply -f funnel-deployment.yml
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