Fix for c302 command #224
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| name: Non-OMV-tests | |
| on: | |
| push: | |
| branches: [ master, development, experimental, ow* ] | |
| pull_request: | |
| branches: [ master, development, experimental, ow* ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.runs-on }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| runs-on: [ubuntu-latest, macos-latest ] | |
| python-version: [ 3.9, "3.10", "3.11", "3.12" ] | |
| exclude: | |
| - runs-on: macos-latest | |
| python-version: "3.8" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install HDF5 for pytables on macos-latest | |
| if: ${{ matrix.runs-on == 'macos-latest' }} | |
| run: | | |
| brew install hdf5 | |
| - name: Install OMV | |
| run: | | |
| pip install git+https://github.com/OpenSourceBrain/osb-model-validation | |
| - name: Install c302 | |
| run: | | |
| pip install . | |
| pip install WormNeuroAtlas | |
| pip list | |
| - name: Test WormNeuroAtlasReader | |
| run: | | |
| python -m c302.WormNeuroAtlasReader | |
| - name: Run some examples | |
| run: | | |
| cd c302 | |
| mkdir examples | |
| python c302_IClamp.py A | |
| pip install neuron | |
| #omv install NEURON # Need to install NEURON | |
| #which nrnivmodl | |
| #export NEURON_HOME=$RUNNER_TOOL_CACHE/Python/3.9.7/x64/ | |
| omv list -V | |
| - name: Run test script | |
| run: | | |
| ./test.sh | |
| - name: Final version info | |
| run: | | |
| pip list | |
| env |