To v0.9.0; full reformat & check with ruff #229
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name: Non-OMV-tests | |
on: | |
push: | |
branches: [ master, development, experimental, ow* ] | |
pull_request: | |
branches: [ master, development, experimental, ow* ] | |
jobs: | |
build: | |
runs-on: ${{ matrix.runs-on }} | |
strategy: | |
fail-fast: false | |
matrix: | |
runs-on: [ubuntu-latest, macos-12, macos-latest ] | |
python-version: [ 3.8, 3.9, "3.10", "3.11" ] | |
exclude: | |
- runs-on: macos-latest | |
python-version: "3.8" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install HDF5 for pytables on macos-latest | |
if: ${{ matrix.runs-on == 'macos-latest' }} | |
run: | | |
brew install hdf5 | |
- name: Install OMV | |
run: | | |
pip install git+https://github.com/OpenSourceBrain/osb-model-validation | |
- name: Install c302 | |
run: | | |
pip install . | |
pip install WormNeuroAtlas | |
pip list | |
- name: Test OpenWormReader with owmeta | |
if: ${{ matrix.python-version != '3.11' }} | |
run: | | |
pip install owmeta>=0.12.3 | |
owm bundle remote --user add ow 'https://raw.githubusercontent.com/openworm/owmeta-bundles/master/index.json' | |
python -m c302.OpenWormReader | |
- name: Test WormNeuroAtlasReader | |
run: | | |
python -m c302.WormNeuroAtlasReader | |
- name: Run some examples | |
run: | | |
cd c302 | |
mkdir examples | |
python c302_IClamp.py A | |
omv list -V | |
omv install NEURON # Need to install NEURON | |
which nrnivmodl | |
export NEURON_HOME=$RUNNER_TOOL_CACHE/Python/3.9.7/x64/ | |
- name: Run test script | |
run: | | |
./test.sh | |
- name: Final version info | |
run: | | |
pip list | |
env |