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To v0.9.0; full reformat & check with ruff #229

To v0.9.0; full reformat & check with ruff

To v0.9.0; full reformat & check with ruff #229

Workflow file for this run

name: Non-OMV-tests
on:
push:
branches: [ master, development, experimental, ow* ]
pull_request:
branches: [ master, development, experimental, ow* ]
jobs:
build:
runs-on: ${{ matrix.runs-on }}
strategy:
fail-fast: false
matrix:
runs-on: [ubuntu-latest, macos-12, macos-latest ]
python-version: [ 3.8, 3.9, "3.10", "3.11" ]
exclude:
- runs-on: macos-latest
python-version: "3.8"
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install HDF5 for pytables on macos-latest
if: ${{ matrix.runs-on == 'macos-latest' }}
run: |
brew install hdf5
- name: Install OMV
run: |
pip install git+https://github.com/OpenSourceBrain/osb-model-validation
- name: Install c302
run: |
pip install .
pip install WormNeuroAtlas
pip list
- name: Test OpenWormReader with owmeta
if: ${{ matrix.python-version != '3.11' }}
run: |
pip install owmeta>=0.12.3
owm bundle remote --user add ow 'https://raw.githubusercontent.com/openworm/owmeta-bundles/master/index.json'
python -m c302.OpenWormReader
- name: Test WormNeuroAtlasReader
run: |
python -m c302.WormNeuroAtlasReader
- name: Run some examples
run: |
cd c302
mkdir examples
python c302_IClamp.py A
omv list -V
omv install NEURON # Need to install NEURON
which nrnivmodl
export NEURON_HOME=$RUNNER_TOOL_CACHE/Python/3.9.7/x64/
- name: Run test script
run: |
./test.sh
- name: Final version info
run: |
pip list
env