Regenerated cells

openworm · Feb 13, 2024 · cd80249 · cd80249
1 parent ab1595e
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Showing 12 changed files with 48 additions and 6 deletions.
diff --git a/examples/parametersweep/README.md b/examples/parametersweep/README.md
@@ -21,6 +21,27 @@
     <img alt="?" src="mean_spike_frequency_dt_GenericNeuronCell.png" height="160"/></a>
   </td>
 <tr>
+<tr>
+  <td width=30><b>GenericNeuronCellX</b></td>
+  <td><a href="mean_spike_frequency_GenericNeuronCellX.png">
+    <img alt="?" src="mean_spike_frequency_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+  <td><a href="firing_rates_GenericNeuronCellX.png">
+    <img alt="?" src="firing_rates_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+  <td><a href="heatmap_GenericNeuronCellX.png">
+    <img alt="?" src="heatmap_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+  <td><a href="dt_traces_GenericNeuronCellX.png">
+    <img alt="?" src="dt_traces_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+  <td><a href="heatmap_dt_GenericNeuronCellX.png">
+    <img alt="?" src="heatmap_dt_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+  <td><a href="mean_spike_frequency_dt_GenericNeuronCellX.png">
+    <img alt="?" src="mean_spike_frequency_dt_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+<tr>
 <tr>
   <td width=30><b>GenericMuscleCell</b></td>
   <td><a href="mean_spike_frequency_GenericMuscleCell.png">

diff --git a/examples/parametersweep/Sweep.py b/examples/parametersweep/Sweep.py
@@ -12,7 +12,7 @@
 
     heatmap_lims=[-110,20]
 
-    standard_stim_amps = ['%spA'%(i/10.0) for i in xrange(-5,70,1)]
+    standard_stim_amps = ['%spA'%(i/10.0) for i in range(-5,70,1)]
 
     if '-all' in sys.argv:
 
@@ -24,7 +24,7 @@
 
 
         vary = {'stim_amp':standard_stim_amps}
-        #vary = {'stim_amp':['%spA'%(i/10.0) for i in xrange(-10,20,5)]}
+        #vary = {'stim_amp':['%spA'%(i/10.0) for i in range(-10,20,5)]}
         #vary = {'stim_amp':['-100pA','0pA','100pA','200pA','300pA','400pA']}
 
         cells = colors.keys()
@@ -146,9 +146,9 @@
 
         vary = {'stim_amp':standard_stim_amps}
 
-        #vary = {'number_per_cell':[i for i in xrange(0,250,10)]}
+        #vary = {'number_per_cell':[i for i in range(0,250,10)]}
         vary = {'stim_amp':['-1pA','0pA','1.5pA','2pA']}
-        vary = {'stim_amp':['%spA'%(i/10.0) for i in xrange(-20,60,5)]}
+        vary = {'stim_amp':['%spA'%(i/10.0) for i in range(-20,60,5)]}
 
         type = 'GenericMuscleCell'
         type = 'GenericNeuronCell'
@@ -197,9 +197,9 @@
         vary = {'dt':[0.1,0.05,0.025,0.01,0.005,0.0025,0.001]}
         vary = {'dt':[0.1,0.05,0.025,0.01,0.005]}
 
-        #vary = {'number_per_cell':[i for i in xrange(0,250,10)]}
+        #vary = {'number_per_cell':[i for i in range(0,250,10)]}
         #vary = {'stim_amp':['1pA','1.5pA','2pA']}
-        vary = {'stim_amp':['%spA'%(i/10.0) for i in xrange(-3,60,1)]}
+        vary = {'stim_amp':['%spA'%(i/10.0) for i in range(-3,60,1)]}
 
         type = 'GenericMuscleCell'
         type = 'GenericNeuronCell'

diff --git a/examples/parametersweep/firing_rates_GenericMuscleCell.png b/examples/parametersweep/firing_rates_GenericMuscleCell.png
diff --git a/examples/parametersweep/firing_rates_GenericNeuronCell.png b/examples/parametersweep/firing_rates_GenericNeuronCell.png
diff --git a/examples/parametersweep/firing_rates_GenericNeuronCellX.png b/examples/parametersweep/firing_rates_GenericNeuronCellX.png
diff --git a/examples/parametersweep/heatmap_GenericMuscleCell.png b/examples/parametersweep/heatmap_GenericMuscleCell.png
diff --git a/examples/parametersweep/heatmap_GenericNeuronCell.png b/examples/parametersweep/heatmap_GenericNeuronCell.png
diff --git a/examples/parametersweep/heatmap_GenericNeuronCellX.png b/examples/parametersweep/heatmap_GenericNeuronCellX.png
diff --git a/examples/parametersweep/info.html b/examples/parametersweep/info.html
@@ -21,6 +21,27 @@
     <img alt="?" src="mean_spike_frequency_dt_GenericNeuronCell.png" height="160"/></a>
   </td>
 <tr>
+<tr>
+  <td width=30><b>GenericNeuronCellX</b></td>
+  <td><a href="mean_spike_frequency_GenericNeuronCellX.png">
+    <img alt="?" src="mean_spike_frequency_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+  <td><a href="firing_rates_GenericNeuronCellX.png">
+    <img alt="?" src="firing_rates_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+  <td><a href="heatmap_GenericNeuronCellX.png">
+    <img alt="?" src="heatmap_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+  <td><a href="dt_traces_GenericNeuronCellX.png">
+    <img alt="?" src="dt_traces_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+  <td><a href="heatmap_dt_GenericNeuronCellX.png">
+    <img alt="?" src="heatmap_dt_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+  <td><a href="mean_spike_frequency_dt_GenericNeuronCellX.png">
+    <img alt="?" src="mean_spike_frequency_dt_GenericNeuronCellX.png" height="160"/></a>
+  </td>
+<tr>
 <tr>
   <td width=30><b>GenericMuscleCell</b></td>
   <td><a href="mean_spike_frequency_GenericMuscleCell.png">

diff --git a/examples/parametersweep/mean_spike_frequency_GenericMuscleCell.png b/examples/parametersweep/mean_spike_frequency_GenericMuscleCell.png
diff --git a/examples/parametersweep/mean_spike_frequency_GenericNeuronCell.png b/examples/parametersweep/mean_spike_frequency_GenericNeuronCell.png
diff --git a/examples/parametersweep/mean_spike_frequency_GenericNeuronCellX.png b/examples/parametersweep/mean_spike_frequency_GenericNeuronCellX.png