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Merge pull request #589 from openworm/development
Release 0.3.9
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| <p align="center"> | ||
| <img src="https://github.com/tarelli/bucket/blob/master/geppetto%20logo.png?raw=true" alt="Geppetto logo"/> | ||
| <img src="https://raw.githubusercontent.com/tarelli/bucket/master/geppetto%20logo.png" alt="Geppetto logo"/> | ||
| </p> | ||
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| # [Geppetto](http://www.geppetto.org/) | ||
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| [](https://gitter.im/openworm/org.geppetto?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge) | ||
| [](https://waffle.io/openworm/org.geppetto) | ||
| [](http://stackshare.io/tarelli/geppetto) | ||
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| #### [Website](http://www.geppetto.org/) | [Documentation](http://docs.geppetto.org/) | [Releases](https://github.com/openworm/org.geppetto/releases/) | ||
| #### [Contribution guidelines](http://docs.geppetto.org/en/latest/contribute.html#how-to-contribute-code-to-geppetto) | [Development progress](https://waffle.io/openworm/org.geppetto) | ||
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| **Geppetto is a web-based platform to visualise and simulate biological models.** | ||
| **Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.** | ||
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| Although Geppetto was designed with neuroscience and biology in mind, Geppetto can be used anywhere there is need to rely on a backend to perform any kind of simulation and allow the user to interact with it through a web application. | ||
| **If you just want to play with a demo Geppetto deployment you don't need to install anything, just visit <https://live.geppetto.org>.** | ||
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| **If you just want to play with a sample Geppetto deployment you don't need to install anything, just visit <https://live.geppetto.org>.** | ||
| If you want to setup your own Geppetto deployment from sources use our [Setup Instructions](http://docs.geppetto.org/en/latest/osxlinuxsetup.html). If you need help building a neuroscience application using Geppetto or if you want to join the project as a contributor you can [send an email](mailto:matteo@geppetto.org) or just interact with us through GitHub! | ||
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| If you want to setup your own Geppetto deployment from sources use our [Setup Instructions](http://docs.geppetto.org/en/latest/osxlinuxsetup.html). If you need help designing your own custom Geppetto deployment or want to join the project as a contributor you can [send an email](mailto:[email protected]) or just interact with us through GitHub! | ||
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| This is the umbrella project that keeps together all the different modules currently available: | ||
| This is the umbrella project that keeps together all the different Geppetto modules currently available: | ||
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| #### Java backend | ||
| The Java backend is used in client-server deployments of Geppetto. The Java backend is modular allowing each deployment to be customised only with the relevant bundles. | ||
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@@ -32,20 +29,15 @@ The Java backend is used in client-server deployments of Geppetto. The Java back | |
| * [org.geppetto.persistence](https://github.com/openworm/org.geppetto.persistence) [](https://travis-ci.org/openworm/org.geppetto.persistence) | ||
| * [org.geppetto.datasources](https://github.com/openworm/org.geppetto.datasources) [](https://travis-ci.org/openworm/org.geppetto.datasources) | ||
| * Domain Specific | ||
| * Neuroscience | ||
| * [org.geppetto.model.neuroml](https://github.com/openworm/org.geppetto.model.neuroml) [](https://travis-ci.org/openworm/org.geppetto.model.neuroml) | ||
| * [org.geppetto.simulator.external](https://github.com/openworm/org.geppetto.simulator.external) [](https://travis-ci.org/openworm/org.geppetto.simulator.external) | ||
| * [org.geppetto.model.swc](https://github.com/openworm/org.geppetto.model.swc) [](https://travis-ci.org/openworm/org.geppetto.model.swc) | ||
| * [org.geppetto.model.nwb](https://github.com/openworm/org.geppetto.model.nwb) [](https://travis-ci.org/openworm/org.geppetto.model.nwb) | ||
| * Previous releases (not currently supported) | ||
| * Neuroscience | ||
| * [org.geppetto.simulator.jlems](https://github.com/openworm/org.geppetto.simulator.jlems) [](https://travis-ci.org/openworm/org.geppetto.simulator.jlems) | ||
| * Fluid mechanics | ||
| * [org.geppetto.model.sph](https://github.com/openworm/org.geppetto.model.sph) [](https://travis-ci.org/openworm/org.geppetto.model.sph) | ||
| * [org.geppetto.solver.sph](https://github.com/openworm/org.geppetto.solver.sph) [](https://travis-ci.org/openworm/org.geppetto.solver.sph) | ||
| * [org.geppetto.simulator.sph](https://github.com/openworm/org.geppetto.simulator.sph) [](https://travis-ci.org/openworm/org.geppetto.simulator.sph) | ||
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| #### Python Backend (prototype) | ||
| * Neuroscience | ||
| * [org.geppetto.model.neuroml](https://github.com/openworm/org.geppetto.model.neuroml) [](https://travis-ci.org/openworm/org.geppetto.model.neuroml) | ||
| * [org.geppetto.simulator.external](https://github.com/openworm/org.geppetto.simulator.external) [](https://travis-ci.org/openworm/org.geppetto.simulator.external) | ||
| * [org.geppetto.model.swc](https://github.com/openworm/org.geppetto.model.swc) [](https://travis-ci.org/openworm/org.geppetto.model.swc) | ||
| * [org.geppetto.model.nwb](https://github.com/openworm/org.geppetto.model.nwb) [](https://travis-ci.org/openworm/org.geppetto.model.nwb) | ||
| * Fluid mechanics (Currently in development) | ||
| * [org.geppetto.sibernetic](https://github.com/openworm/org.geppetto.sibernetic) [](https://travis-ci.org/openworm/org.geppetto.sibernetic) | ||
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| #### Python Backend (prototype, in development) | ||
| The Python backend is based on a Geppetto Jupyter extension which allows the user to interact with the Geppetto frontend from Python. This deployment makes it ideal to use Geppetto as a visualization/computational local playground. | ||
| * [org.geppetto.frontend.jupyter](https://github.com/openworm/org.geppetto.frontend.jupyter) [](https://travis-ci.org/openworm/org.geppetto.frontend.jupyter) | ||
| * [pyGeppetto](https://github.com/openworm/pygeppetto) | ||
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@@ -62,3 +54,6 @@ Geppetto is an open-source project with a growing community, if you want to cont | |
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| Geppetto is released under the [MIT](http://opensource.org/licenses/MIT) license. | ||
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| <p align="center"> | ||
| <img src="http://www.geppetto.org/images/geppetto.png" alt="Geppetto"/> | ||
| </p> | ||
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