Releases: openworm/org.geppetto
Geppetto Release 0.3.3
Install Instructions | Documentation | Live deployment
New in release 0.3.3-alpha:
- New plotting widget (@jrmartin
)
- New stack viewer widget (@Robbie1977
- Neuronal connections now pointing to synaptic location (@tarelli)
- Synchronise State Variables with Jupyter Geppetto (@adrianq)
- Persist simulation errors (@jrmartin)
- Widgets minimise, maximise (@jrmartin)
- Delete experiment confirmation dialog (@mattearnshaw)
- Hide implicit commands in console (@mattearnshaw)
- Casper automated UI tests (@slarson
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.
† The Jupyter notebook extension and the and Node.js bundle are experimental mocked backends the frontend can connect to.
Part of the work in this release was supported by:
Geppetto Release 0.3.2
Install Instructions | Documentation | Live deployment
New in release 0.3.2-alpha:
- Query component (@gidili
- Simulation workflows improvements (@jrmartin,@tarelli)
- Components factory and asynchronous components loading (@adrianq, @tarelli, @gidili)
- Menu button component (@jrmartin)
- Tutorial component (@jrmartin,@tarelli)
- Extensions refactoring (@adrianq,@tarelli)
- Cross datasource queries (@tarelli,@gidili)
- AberOWL datasource support (@tarelli)
- Python console (@borismarin,@adrianq,@tarelli)
- THREE.js upgraded to r81 (@tarelli)
- Jupyter notebook extension† (@adrianq
- Node.js backend skeleton† (@adrianq)
- Lazy loading of NWB files (@niteshthali08, @tarelli, @gidili)
- Documentation update (@LordKrabo,@tarelli,@jrmartin)
- Movie mode (@tarelli)
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.
† The Jupyter notebook extension and the and Node.js bundle are experimental mocked backends the frontend can connect to.
Part of the work in this release was supported by:
Geppetto Release 0.3.1
Install Instructions | Documentation | Live deployment
New in release 0.3.1-alpha:
- Performance improvements loading projects (@tarelli)
- Components refactoring (@adrianq, @gidili)
- Connectivy widget configuration improvements (@borismarin, @tarelli)
- Created docker images to setup Geppetto and Eclipse development environment (@slars0n)
- Widgets inline help (@borismarin)
- Lazy loading of NeuroML projections (@tarelli)
- Clone experiment functionality (@jrmartin)
- Added form widget component (@adrianq)
- Added support to spotlight to interface with external data sources (@jrmartin)
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.
Part of the work in this release was supported by Virtual Fly Brain and Open Source Brain through multiple Wellcome Trust grants.
Geppetto Release 0.3.0
Install Instructions | Documentation | Live deployment
New in release 0.3.0-alpha:
- Add support to run NEURON simulations on San Diego supercomputer center (@adrianq)
- Add support for Neurodata Without Borders files (@niteshthali08, @tarelli)
- Add ability to load new types at runtime (@gidili, @tarelli, @Robbie1977)
- Add data sources and ability to run external queries to fetch data and models (Neo4j support) (@tarelli, @Robbie1977, @gidili)
- Add new control panel component (@gidili, @tarelli)
- Extend popup widget to visualize structured types (@tarelli)
- Add actions history to widgets (@tarelli)
- Add support to visualise cloud point data (@tarelli)
- Add API to flip camera on X and Z axis (@tarelli)
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.
Part of the work in this release was supported by Virtual Fly Brain and Open Source Brain through multiple Wellcome Trust grants.
Geppetto Release 0.2.9
Install Instructions | Documentation | Live deployment
New in release 0.2.9-alpha:
- NeuroML model interpreter refactoring (@adrianq)
- QUnit tests improvements (@adrianq)
- Help dialog improvements (@LordKrabo)
- Messages improvements (@pgleeson)
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.
Part of the work in this release was supported by Open Source Brain and Virtual Fly Brain through multiple Wellcome Trust grants.
Geppetto Release 0.2.8
Install Instructions | Documentation | Live deployment
New in release 0.2.8-alpha:
- New ecore based Geppetto model abstraction including types, instances and arrays (@tarelli)
- Backend refactoring introducing types, instances and arrays (@tarelli)
- Frontend refactoring introducing types, instances and arrays (@gidili, @tarelli)
- NeuroML model interpreter rewrite to use types, instances and arrays (@adrianq)
- Multi-compartment neuronal simulations improvements (@adrianq)
- Multi-compartment neuronal simulations lighting up (@adrianq)
- Added support for database user groups (@gidili)
- Added support for UI workflows (@gidili, @tarelli)
- Refactored Tree visualiser widget, performance improvement, UI model, lazy loading (@adrianq)
- Added Lightspeed search (@tarelli)
- Improved Chord plot, connectivity widget refactoring (@borismarin)
- Refactored Plotting widget, performance improvement, added support for value reading (@tarelli)
- Added support for cloud point visualisation for vertex only OBJs (@tarelli)
- QUnit tests update (@gidili)
- Integration tests improvement (@tarelli, @adrianq)
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.
Part of the work in this release was supported by Open Source Brain and Virtual Fly Brain through multiple Wellcome Trust grants.
Geppetto release 0.2.7
Install Instructions | Documentation | Live deployment
New in release 0.2.7-alpha:
- Added support for visualizing NeuroML inhomogeneous channel densities (@adrianq)
- Improved selection (@Robbie1977,@tarelli)
- Added visual group support also when using line based visualization (@tarelli)
- Add units to Plotting widget (@gidili)
- Add pointers support to Popup widget (@gidili)
This release doesn't include the SPH bundles which are currently undergoing a refactoring to be integrated with the new experiment based workflows.
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.
Part of the work in this release was supported by Virtual Fly Brain and Open Source Brain through a grant from the Wellcome Trust.
Geppetto release 0.2.6
Install Instructions | Documentation | Live deployment
New in release 0.2.6-alpha:
- Added camera scripting (@felipetavares)
- Fixed loading issues (@adrianq)
- QUnit tests update (@jrmartin)
- Added support for multiple selection (@tarelli)
- Added SWC model interpreter (@tarelli)
- Added setOpacity API (@tarelli)
- Added lines based visualisation (@tarelli)
- Documentation updated (@tarelli, @gidili)
This release doesn't include the SPH bundles which are currently undergoing a refactoring to be integrated with the new experiment based workflows.
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see intructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.
Part of the work in this release was supported by Virtual Fly Brain and Open Source Brain through a grant from the Wellcome Trust and by the OpenWorm Kickstarter campaign.
Geppetto release 0.2.5
Install Instructions | Documentation | Live deployment
New in release 0.2.5-alpha:
- Messages compression refactoring (@frenkield)
- Added embedded Maven profile support (@adrianq)
- Added CORS support (@adrianq)
- Improved widget API (@gidili)
- Improved frontend performances (@tarelli,@gidili)
This release doesn't include the SPH bundles which are currently undergoing a refactoring to be integrated with the new experiment based workflows.
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see intructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.
Part of the work in this release was supported by Open Source Brain through a grant from the Wellcome Trust and by the OpenWorm Kickstarter campaign.
Geppetto release 0.2.4
Install Instructions | Documentation | Live deployment
New in release 0.2.4-alpha:
- Messages compression (@frenkield)
- Geppetto Dashboard (@azee,@tarelli,@gidili,@ddanny)
- Run neuronal simulations using NEURON (@jrmartin, @adrianq,@tarelli)
- Set simulation parameters (@jrmartin,@tarelli)
- Add database support (@ddanny,@tarelli,@gidili,@adrianq)
- Add Amazon S3 support (@ddanny,@tarelli)
- Experiment workflows* backend refactoring (@tarelli,@ddanny)
- Experiment workflows* frontend refactoring (@jrmartin,@tarelli)
- Experiments UI (@jrmartin,@gidili,@tarelli,@adrianq)
- Download models (@adrianq)
- Download simulation results (@jrmartin,@tarelli)
- Support for multi-compartment neuronal simulations (@adrianq)
- Upload models and simulation results to DropBox (@jrmartin,@tarelli)
- HDF5 Recordings creation and replaying (@jrmartin,@adrianq,@gidili,@tarelli)
- Styling (@tarelli)
* Experiment workflows refers to the ability of running a simulation asynchronously and independently of the user session. The simulation results are now recorded and persisted, streamed to the client and re-played in the browser.
This release doesn't include the SPH bundles which are currently undergoing a refactoring to be integrated with the new experiment based workflows.
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see intructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.
Part of the work in this release was supported by Open Source Brain through a grant from the Wellcome Trust and by the OpenWorm Kickstarter campaign.