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@DaehwanKimLab Kim Lab at UT Southwestern Medical Center

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    17 repositories

    • hisat2

      Public
      Graph-based alignment (Hierarchical Graph FM index)
      C++
      •
      GNU General Public License v3.0
      •120•484•217•15•Updated Nov 15, 2024Nov 15, 2024

    • centrifuge

      Public
      Classifier for metagenomic sequences
      C++
      •
      GNU General Public License v3.0
      •73•250•127•1•Updated Oct 20, 2024Oct 20, 2024

    • SEClass

      Public
      C++
      •2•6•0•0•Updated May 10, 2024May 10, 2024

    • tophat

      Public
      Spliced read mapper for RNA-Seq
      C++
      •
      Boost Software License 1.0
      •46•92•36•4•Updated Jul 9, 2023Jul 9, 2023

    • lcc

      Public
      life function compiler
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•0•Updated May 5, 2023May 5, 2023

    • LDPVisualization

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 7, 2022Jun 7, 2022

    • Chromosome-ReAD

      Public
      Chromosome-Recurrent Abnormality Detector (ReAD) is a neural network for automatically identifying structural rearrangements important in hematology oncology.
      Jupyter Notebook
      •
      MIT License
      •3•4•0•0•Updated Mar 20, 2022Mar 20, 2022

    • seqwho

      Public
      SeqWho - A reliable and rapid FASTQ(A) file classifier
      Python
      •
      GNU General Public License v3.0
      •1•11•1•0•Updated Jan 21, 2022Jan 21, 2022

    • aws-indexes

      Public
      Catalog of genomic indexes freely available from public clouds
      Python
      •4•0•0•0•Updated Dec 1, 2021Dec 1, 2021

    • hisat-genotype

      Public
      Python
      •
      GNU General Public License v3.0
      •14•28•37•3•Updated Aug 9, 2021Aug 9, 2021

    • hisatgenotype_db

      Public
      HISAT-genotype's database for human genes or genomic regions
      2•5•2•0•Updated Feb 3, 2020Feb 3, 2020

    • linux

      Public
      Linux kernel source tree
      C
      •
      Other
      •55k•0•0•0•Updated May 7, 2019May 7, 2019

    • DaehwanKim.github.io

      Public
      0•0•0•0•Updated Feb 26, 2019Feb 26, 2019

    • forum

      Public
      0•0•0•0•Updated Feb 25, 2019Feb 25, 2019

    • test2

      Public
      A simple yet classy theme for your Jekyll website or blog.
      CSS
      •
      MIT License
      •654•0•0•0•Updated Dec 1, 2018Dec 1, 2018

    • hisat

      Public
      Fast spliced aligner with low memory requirements
      C++
      •
      GNU General Public License v3.0
      •19•41•6•0•Updated Sep 8, 2015Sep 8, 2015

    • tophat2

      Public
      tophat2 is exactly the same source as tophat (just naming convention), so please use tophat (https://github.com/infphilo/tophat)
      3•3•2•0•Updated Mar 31, 2015Mar 31, 2015