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    40 repositories

    • scipion-em-xmipp

      Public
      Plugin to use Xmipp programs within the Scipion framework
      Python
      •
      GNU General Public License v3.0
      •5•11•10•11•Updated Mar 26, 2025Mar 26, 2025

    • scipion-containers

      Public
      Set of recipes to build containerised Scipion+Xmipp images
      Shell
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Mar 26, 2025Mar 26, 2025

    • xmipp

      Public
      Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.
      cryo-emcryoemscipion
      C++
      •
      GNU General Public License v3.0
      •15•41•5•9•Updated Mar 25, 2025Mar 25, 2025

    • scipion-portal

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • xmipp3-installer

      Public
      Python package that handles the installation of xmipp3
      Python
      •
      GNU General Public License v3.0
      •0•1•1•1•Updated Mar 24, 2025Mar 24, 2025

    • xmippViz

      Public
      Visualization programs and functions for Xmipp and sharing with other packages (like Scipion)
      Java
      •
      GNU General Public License v3.0
      •0•1•18•0•Updated Mar 24, 2025Mar 24, 2025

    • xmippCore

      Public
      Core functions for Xmipp and sharing with other packages (like Scipion)
      C++
      •
      GNU General Public License v3.0
      •2•4•3•0•Updated Mar 24, 2025Mar 24, 2025

    • xmippJavaDoc

      Public
      Xmipp Java API documentation
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 23, 2025Mar 23, 2025

    • xmippPythonDoc

      Public
      Xmipp python API documentation
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 23, 2025Mar 23, 2025

    • xmippDoc

      Public
      Xmipp API Documentation
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 23, 2025Mar 23, 2025

    • scipion-em-xmipptomo

      Public
      Xmipp tomography protocols
      Python
      •
      GNU General Public License v3.0
      •0•4•7•3•Updated Mar 21, 2025Mar 21, 2025

    • docs

      Public
      Documentation for the xmipp world
      CSS
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • scipion-em-validation

      Public
      Code for the I2PC validation server
      Python
      •0•3•0•0•Updated Mar 13, 2025Mar 13, 2025

    • web-oscem-viewer

      Public
      JavaScript classes for the visualization of OSCEM metadata
      JavaScript
      •0•1•0•0•Updated Mar 12, 2025Mar 12, 2025

    • Flexutils-Toolkit

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Mar 6, 2025Mar 6, 2025

    • scipion-afm

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Feb 19, 2025Feb 19, 2025

    • buildbot

      Public
      buildbot setup for automated tests
      Python
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • xmipp-portal

      Public
      Python
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Feb 13, 2025Feb 13, 2025

    • Flexutils-Scripts

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • scipion-scripts

      Public
      Scipion sample scripts
      Python
      •1•1•0•0•Updated Oct 28, 2024Oct 28, 2024

    • scipion-em-xmippBase

      Public
      Repository to provide base protocols and functionalities to scipion-em-xmipp and scipion-em-xmippTomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • web-workflow-viewer

      Public
      HTML Workflow viewer based on workflow json files exported from Scipion.
      JavaScript
      •1•1•0•0•Updated Sep 2, 2024Sep 2, 2024

    • scipion-courses

      Public
      material for Scipion courses
      0•0•0•0•Updated Jun 10, 2024Jun 10, 2024

    • EMadmin

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•1•0•Updated Apr 8, 2024Apr 8, 2024

    • neoantigenPrediction

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • scipion-docker

      Public
      Dockerfile
      •
      GNU General Public License v3.0
      •4•2•0•0•Updated Nov 29, 2023Nov 29, 2023

    • testDataSym

      Public
      Test data for testing symmetries
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Sep 12, 2023Sep 12, 2023

    • scipion

      Public archive
      Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
      workflowstructural-biologyimage-processingreproducible-scienceusabilitycryo-emsingle-particle-analisyspythonc-plus-pluselectron-microscopy
      Python
      •
      Other
      •48•80•167•0•Updated Apr 26, 2023Apr 26, 2023

    • scipionWorkflowRepository

      Public
      Workflow repository for Scipion
      Python
      •0•0•0•4•Updated Dec 8, 2022Dec 8, 2022

    • FAIR_eva

      Public
      Python
      •
      Apache License 2.0
      •4•1•0•0•Updated Nov 30, 2022Nov 30, 2022