Microbial-Ecology-Group

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16 repositories

vero-research
Public
HTML
•0•0•0•0•Updated Nov 4, 2024Nov 4, 2024
VARIANTplusplus
Public
Nextflow
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MIT License
•0•0•0•0•Updated Aug 23, 2024Aug 23, 2024
Full_GI_manuscript_code
Public
R
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MIT License
•0•0•0•0•Updated Jul 5, 2024Jul 5, 2024
AMRplusplus
Public
AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.
Nextflow
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GNU General Public License v3.0
•11•28•15•1•Updated Jun 18, 2024Jun 18, 2024
Manuscript-Mh_TE_validation
Public
Repository for results and R code used in the manuscript...
0•0•0•0•Updated Jan 11, 2024Jan 11, 2024
Bioinformatics_tools
Public
Repository for VERO bioinformatics tools
R
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MIT License
•0•0•0•0•Updated Dec 14, 2023Dec 14, 2023
TE_inputDNA_manuscript_code
Public
0•0•0•0•Updated Jul 12, 2023Jul 12, 2023
PetRisk_manuscript_code
Public
HTML
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MIT License
•0•0•0•0•Updated Jun 28, 2023Jun 28, 2023
Student_workspace
Public
0•0•0•0•Updated May 26, 2023May 26, 2023
meglab
Public
HTML
•0•0•0•0•Updated Jan 14, 2023Jan 14, 2023
AMRplusplus_bioinformatic_workshop
Public
R
•2•5•1•0•Updated Jan 2, 2023Jan 2, 2023
megares-db
Public
Java
•0•1•0•0•Updated Nov 19, 2022Nov 19, 2022
megares
Public
TypeScript
•0•0•1•0•Updated Nov 19, 2022Nov 19, 2022
Bioinformatics_resources
Public
R
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MIT License
•1•2•0•0•Updated Sep 28, 2022Sep 28, 2022
Antimicrobial-drug-use-effect-on-microbiome-and-resistome-of-beef-feedlots
Public
This repository contains all of the code required to replicate the analysis in the manuscript "METAGENOMIC INVESTIGATION OF THE EFFECTS OF ANTIMICROBIAL DRUG USE PRACTICES ON THE MICROBIOME AND RESISTOME OF BEEF FEEDLOT CATTLE"
R
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MIT License
•0•2•0•0•Updated Oct 25, 2021Oct 25, 2021
Guelph_calf_diarrhea_metagenomic_analyses
Public
R
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MIT License
•0•0•0•0•Updated Jan 23, 2020Jan 23, 2020