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    40 repositories

    • agave

      Public
      C++
      •
      Other
      •10•41•52•8•Updated Feb 13, 2025Feb 13, 2025

    • timelapse-colorizer

      Public
      A web-based, time-series visualizer for tracked segmented data.
      TypeScript
      •
      Other
      •1•10•130•6•Updated Feb 13, 2025Feb 13, 2025

    • vole-core

      Public
      TypeScript
      •
      Other
      •7•95•43•2•Updated Feb 13, 2025Feb 13, 2025

    • vole-app

      Public
      TypeScript
      •
      Other
      •4•4•62•2•Updated Feb 13, 2025Feb 13, 2025

    • cell-catalog

      Public
      Cell catalog 2.0 [beta]
      TypeScript
      •
      MIT License
      •0•0•9•4•Updated Feb 12, 2025Feb 12, 2025

    • cell-line-catalog

      Public
      HTML
      •0•1•4•10•Updated Feb 7, 2025Feb 7, 2025

    • colorizer-data

      Public
      example scripts and utilities for preparing data for the time series colorizer app
      Python
      •
      Other
      •0•1•16•0•Updated Jan 7, 2025Jan 7, 2025

    • cell-feature-explorer

      Public
      TypeScript
      •
      Other
      •0•2•77•2•Updated Dec 19, 2024Dec 19, 2024

    • website-3d-cell-viewer-release

      Public
      0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • MiTOSSis

      Public
      Unity Project for the MiTOSSis VR game
      C#
      •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • cell-feature-data

      Public
      This repo handles validating, processing and uploading CFE datasets
      JavaScript
      •1•0•4•0•Updated Oct 21, 2024Oct 21, 2024

    • cell-abm-pipeline

      Public
      Simulation, analysis, and visualization workflows for cell-scale agent-based models
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•1•0•Updated Sep 25, 2024Sep 25, 2024

    • abm-colony-collection

      Public
      Collection of tasks for analyzing colony dynamics
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Sep 25, 2024Sep 25, 2024

    • abm-shape-collection

      Public
      Collection of tasks for analyzing cell shapes
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Sep 25, 2024Sep 25, 2024

    • abm-initialization-collection

      Public
      Collection of tasks for initializing ABM simulations
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Sep 25, 2024Sep 25, 2024

    • io-collection

      Public
      Collection of tasks for I/O
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Sep 25, 2024Sep 25, 2024

    • cellbrowser-tools

      Public
      Python
      •
      Other
      •0•0•2•2•Updated Aug 20, 2024Aug 20, 2024

    • nbvv

      Public
      Jupyter notebook extension for volume-viewer
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•7•2•0•Updated May 30, 2024May 30, 2024

    • render-style-transfer

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 2, 2024Apr 2, 2024

    • allencell-nav-bar

      Public
      JavaScript
      •
      Other
      •0•0•0•1•Updated Apr 25, 2023Apr 25, 2023

    • on-boarding

      Public
      Python
      •1•0•0•0•Updated Mar 21, 2023Mar 21, 2023

    • base-react-redux-app

      Public template
      TypeScript
      •
      Other
      •2•0•0•12•Updated Mar 1, 2023Mar 1, 2023

    • node-project-actions

      Public
      JavaScript
      •
      Other
      •0•0•0•0•Updated Sep 19, 2022Sep 19, 2022

    • visual-essay-framework

      Public template
      TypeScript
      •0•0•0•2•Updated Jun 23, 2022Jun 23, 2022

    • wetzel

      Public
      Generate Markdown documentation from JSON Schema
      JavaScript
      •
      Apache License 2.0
      •54•0•0•0•Updated Dec 16, 2021Dec 16, 2021

    • deepzoom_demo

      Public
      JavaScript
      •
      Other
      •0•0•1•0•Updated Nov 30, 2021Nov 30, 2021

    • visual-essay-integrated-mitotic-cell

      Public
      The Integrated Mitotic Stem Cell is a data driven model and visualization tool that captures a holistic view of human cell division. This model transforms microscopy images of 15 individual organelles into an integrated representation of the undifferentiated human induced pluripotent stem cell (hIPSC) at each major stage of mitosis.
      mitosisstem-cells
      TypeScript
      •
      Other
      •0•0•0•1•Updated Sep 27, 2021Sep 27, 2021

    • CellVRUnity

      Public
      Unity project for VR applications
      C#
      •0•1•1•0•Updated Aug 11, 2021Aug 11, 2021

    • github-boilerplate

      Public template
      Other
      •0•0•1•0•Updated Jul 13, 2021Jul 13, 2021

    • threejs-cell-test

      Public
      HTML
      •0•0•0•0•Updated Apr 21, 2021Apr 21, 2021