Repositories list

• cleo

  Public
  Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

  simulationcomputational-neuroscienceelectrophysiology+ 2closed-loop-controloptogenetics

  Python

  •

  MIT License

  •0•16•6•1•Updated Nov 15, 2024Nov 15, 2024

• cleo-traveling-wave-rejection

  Public
  Python

  •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

• cleo-v1-plasticity-expt

  Public
  Code for the V1 plasticity disruption experiment in the Cleo publication

  Python

  •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

• tklfp

  Public
  Lightweight package for computing the kernel LFP approximation from Teleńczuk et al., 2020

  computational-neuroscience

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Jun 7, 2024Jun 7, 2024

• wslfp

  Public
  Lightweight package for computing the Weighted Sum of synaptic currents LFP proxy from Mazzoni, Lindén et al., 2015

  computational-neuroscience

  Python

  •

  MIT License

  •0•0•1•0•Updated Jun 7, 2024Jun 7, 2024

• cleo-hpc-experiments

  Public
  Python

  •1•0•0•0•Updated May 29, 2024May 29, 2024

• probabilistic-decomposed-linear-dynamical-systems

  Public
  Probabilistic Decomposed Linear Dynamical Systems

  Python

  •

  MIT License

  •0•5•0•0•Updated Mar 1, 2024Mar 1, 2024

• uot-irst

  Public
  Implementation of unbalanced optimal transport algorithms for infrared search and track from Bertrand et al., 2020

  unbalanced-optimal-transportinfrared-search-and-track

  MATLAB

  •0•0•0•0•Updated Oct 31, 2023Oct 31, 2023

• emd-df

  Public
  MATLAB implementation of the Earth Mover's Distance Dynamic Filtering (EMD-DF) algorithm from Bertrand et al., 2018

  optimal-transportdynamic-filtering

  MATLAB

  •0•0•0•0•Updated Oct 31, 2023Oct 31, 2023

• Decomposed-Linear-Dynamical-Systems

  Public
  This is code for the paper "Decomposed Linear Dynamical Systems (dLDS) for learning the latent components of neural dynamics" (Mudrik, 2022)

  0•0•0•0•Updated Oct 30, 2023Oct 30, 2023

• .github

  Public
  0•0•0•0•Updated Sep 20, 2023Sep 20, 2023

• Sparse-Coding-Dictionary-Learning-Library

  Public
  Code to implement the sparse coding dictionary learning algorithm described in "Emergence of simple-cell receptive field properties by learning a sparse code for natural images" in Nature (1996) by Olshausen and Field.

  MATLAB

  •0•0•0•0•Updated Oct 24, 2022Oct 24, 2022

• Convergence-speed-of-a-dynamical-system-performing-sparse-coding

  Public
  Code to produce the results in the paper "Convergence Speed of a Dynamical System for Sparse Recovery" in IEEE Trans. Signal Processing (2013) by Balavoine, Rozell and Romberg. Code by A. Balavoine.

  MATLAB

  •0•1•0•0•Updated Oct 24, 2022Oct 24, 2022

• Tracking-sparse-signals-via-L1-filtering

  Public
  Code to produce the results in the paper "Discrete and Continuous-time Soft-Thresholding with Dynamic Inputs" by Balavoine, Rozell and Romberg. Code by A. Balavoine.

  MATLAB

  •0•1•0•0•Updated Oct 18, 2022Oct 18, 2022

• Dynamic-filtering-for-sparse-signals

  Public
  Code to implement the algorithm described in the paper "Dynamic filtering of time-varying sparse signals via L1 minimization"

  MATLAB

  •0•0•0•0•Updated Oct 18, 2022Oct 18, 2022

• Spatial-Filtering-for-Sparse-Signals

  Public
  Code to implement the algorithm described in the paper "Spectral super-resolution of hyperspectral imagery using re-weighted L1 spatial filtering" in IEEE GRSL (2014) by Charles and Rozell. Code by A. Charles.

  MATLAB

  •0•3•0•0•Updated Oct 4, 2022Oct 4, 2022

• Inhibitory-interneuron-models-via-convex-optimization

  Public
  Code to produce the results in the paper "Modeling biologically realistic inhibitory interneurons in sensory coding models" in PLoS Computational Biology (2015) by Zhu and Rozell. Code by M. Zhu.

  MATLAB

  •0•0•0•0•Updated Oct 4, 2022Oct 4, 2022

• DIC-Cell-Simulator

  Public
  Code to implement the simulation framework described in the manuscript "Cell Membrane Tracking in Living Brain Tissue using Differential Interference Contrast Microscopy" by Lee, Kolb, Forest and Rozell. Code by J. Lee.

  MATLAB

  •2•2•0•0•Updated Sep 30, 2022Sep 30, 2022

• UOT-regularization

  Public
  Code for "Unbalanced Optimal Transport Regularization for Imaging Problems" by Lee, Bertrand, and Rozell.

  MATLAB

  •1•1•0•0•Updated Oct 12, 2021Oct 12, 2021

• manifold-autoencoder-extended

  Public
  Jupyter Notebook

  •2•3•0•0•Updated Oct 3, 2021Oct 3, 2021

• pairsearch

  Public
  Project code for "Active Embedding Search via Noisy Paired Comparisons" (ICML 2019)

  Python

  •3•8•0•0•Updated Sep 30, 2021Sep 30, 2021

• APM-LR

  Public
  Approximate Posterior Matching for Logistic Regression (APM-LR). Project code for "Feedback Coding for Active Learning" (AISTATS 2021).

  Python

  •0•4•0•0•Updated Sep 30, 2021Sep 30, 2021

• VAELLS

  Public
  Code for "Variational Autoencoder with Learned Latent Structure"

  Python

  •2•33•0•0•Updated Mar 5, 2021Mar 5, 2021

• generative-causal-explanations

  Public
  Code for "Generative causal explanations of black-box classifiers"

  Python

  •12•33•0•0•Updated Jan 15, 2021Jan 15, 2021

• localized-sparse-coding

  Public
  Sparse dictionary learning with biologically plausible compression matrices

  Jupyter Notebook

  •0•1•0•0•Updated Oct 22, 2020Oct 22, 2020

• Manifold_Autoencoder

  Public
  Code for "Representing Closed Transformation Paths in Encoded Network Latent Space"

  Python

  •2•3•0•0•Updated Jul 22, 2020Jul 22, 2020

• infotuple

  Public
  Code supplement for "Active Ordinal Querying for Tuplewise Similarity Learning", appearing in AAAI 2020

  Python

  •1•5•0•0•Updated Feb 2, 2020Feb 2, 2020

• hiwa-matlab

  Public
  Hierarchical Wasserstein Alignment

  MATLAB

  •

  GNU General Public License v3.0

  •1•10•0•0•Updated Nov 29, 2019Nov 29, 2019