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Restructure amount #560

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merged 4 commits into from
Jun 14, 2024
Merged

Restructure amount #560

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15889b4
Restructure amount
rays22 Jun 13, 2024
ac902a9
Improve the textual definition of quantitative
rays22 Jun 13, 2024
ef6da75
Define qualitative and qualitative
rays22 Jun 13, 2024
842992a
Add xrefs
rays22 Jun 13, 2024
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15 changes: 11 additions & 4 deletions src/ontology/pato-edit.obo
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Expand Up @@ -234,7 +234,7 @@ subset: attribute_slim
subset: relational_slim
subset: scalar_slim
synonym: "concentration" EXACT []
is_a: PATO:0002182 ! molecular quality
is_a: PATO:0000070 ! amount

[Term]
id: PATO:0000034
Expand Down Expand Up @@ -468,6 +468,7 @@ is_obsolete: true
[Term]
id: PATO:0000068
name: qualitative
def: "A quality of an entity that is descriptive or observational, typically not represented numerically." [https://libguides.macalester.edu/c.php?g=527786&p=3608639, https://www.ncbi.nlm.nih.gov/books/NBK470395/]
comment: TODO: define this or obsolete it and move children somewhere else.
is_a: PATO:0000001 ! quality

Expand All @@ -493,7 +494,7 @@ synonym: "number" RELATED []
synonym: "presence" RELATED []
synonym: "presence or absence in organism" EXACT []
synonym: "quantitative" EXACT []
is_a: PATO:0000068 ! qualitative
is_a: PATO:0103000 ! quantitative
relationship: RO:0015012 PATO:0001555 ! reciprocal of has number of

[Term]
Expand Down Expand Up @@ -10238,8 +10239,7 @@ synonym: "mereological quality" EXACT []
synonym: "number" RELATED []
synonym: "number of" EXACT []
xref: OBO_REL:has_part
is_a: PATO:0001241 ! physical object quality
relationship: RO:0015012 PATO:0000070 ! reciprocal of amount
is_a: PATO:0000070 ! amount

[Term]
id: PATO:0001558
Expand Down Expand Up @@ -22580,6 +22580,13 @@ is_a: PATO:0001995 ! organismal quality
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-2908-3327
property_value: http://purl.org/dc/elements/1.1/date "2021-05-17T13:28:41Z" xsd:dateTime

[Term]
id: PATO:0103000
name: quantitative
def: "A quality of an entity that can be represented numerically, including anything that can be counted, measured, or given a numerical value." [https://libguides.macalester.edu/c.php?g=527786&p=3608639, https://www.nnlm.gov/guides/data-glossary/quantitative-data]
is_a: PATO:0000001 ! quality
created_by: https://orcid.org/0000-0001-8314-2140

[Typedef]
id: correlates_with
name: obsolete correlates_with
Expand Down
4 changes: 4 additions & 0 deletions src/ontology/pato-idranges.owl
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Expand Up @@ -103,3 +103,7 @@ EquivalentTo: xsd:integer[> 102000 , <= 102500]
Datatype: idrange: 24
Annotations: allocatedto: "James McLaughlin"
EquivalentTo: xsd:integer[> 102500 , <= 103000]

Datatype: idrange: 25
Annotations: allocatedto: "Ray Stefancsik"
EquivalentTo: xsd:integer[> 103000 , <= 103200]
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