Parallel insty actually fixed

[jamesmkrieger]

I have fixed the bad ordering problem by using indexing instead of appending

I have checked that the test runs ok and that we get interactions as output:

In [1]: from prody import *

In [2]: confProDy(verbosity='none')
@> ProDy is configured: verbosity='none'

In [3]: from prody.tests.proteins.test_insty import TestInteractions
s
In [4]: self = TestInteractions()

In [5]: self.setUp()

In [6]: self.testAllInteractionsCalc()

In [7]: self.INTERACTIONS_ALL.getSaltBridges()[0]
Out[7]: 
[['GLU24', 'OE1_378_379', 'A', 'LYS27', 'NZ_424', 'A', 3.0107],
 ['LYS29', 'NZ_456', 'A', 'ASP21', 'OD1_332_333', 'A', 3.1156],
 ['LYS11', 'NZ_175', 'A', 'GLU34', 'OE1_547_548', 'A', 3.1266],
 ['LYS33', 'NZ_526', 'A', 'ASP32', 'OD1_512_513', 'A', 3.396],
 ['GLU64', 'OE1_1026_1027', 'A', 'LYS63', 'NZ_1005', 'A', 3.4803],
 ['ARG74', 'NH1_1201_1202', 'A', 'ASP39', 'OD1_615_616', 'A', 3.7043],
 ['ARG72', 'NH1_1158_1159', 'A', 'ASP39', 'OD1_615_616', 'A', 4.6678]]

and likewise for the serial case

In [5]: self.testAllInteractionsCalcSerial()

In [6]: self.INTERACTIONS_ALL.getSaltBridges()[0]
Out[6]: 
[['GLU24', 'OE1_378_379', 'A', 'LYS27', 'NZ_424', 'A', 3.0107],
 ['LYS29', 'NZ_456', 'A', 'ASP21', 'OD1_332_333', 'A', 3.1156],
 ['LYS11', 'NZ_175', 'A', 'GLU34', 'OE1_547_548', 'A', 3.1266],
 ['LYS33', 'NZ_526', 'A', 'ASP32', 'OD1_512_513', 'A', 3.396],
 ['GLU64', 'OE1_1026_1027', 'A', 'LYS63', 'NZ_1005', 'A', 3.4803],
 ['ARG74', 'NH1_1201_1202', 'A', 'ASP39', 'OD1_615_616', 'A', 3.7043],
 ['ARG72', 'NH1_1158_1159', 'A', 'ASP39', 'OD1_615_616', 'A', 4.6678]]