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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Source for the QIIME 2 Framework (Q2F).

    Python 514 256

  2. distributions distributions Public

    Makefile 5 8

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 27

  4. docs docs Public archive

    Python 21 60

Repositories

Showing 10 of 79 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 2 3 1 Updated Sep 29, 2025
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 5 BSD-3-Clause 8 8 8 Updated Sep 28, 2025
  • qiime2 Public

    Source for the QIIME 2 Framework (Q2F).

    qiime2/qiime2’s past year of commit activity
    Python 514 BSD-3-Clause 256 67 (4 issues need help) 11 Updated Sep 26, 2025
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    qiime2/q2doc’s past year of commit activity
    Python 0 1 5 0 Updated Sep 25, 2025
  • q2-demux Public
    qiime2/q2-demux’s past year of commit activity
    Python 1 BSD-3-Clause 22 9 (3 issues need help) 1 Updated Sep 25, 2025
  • qiime2/q2-composition’s past year of commit activity
    Python 6 BSD-3-Clause 27 6 1 Updated Sep 25, 2025
  • q2view Public

    A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

    qiime2/q2view’s past year of commit activity
    TypeScript 1 BSD-3-Clause 2 2 2 Updated Sep 25, 2025
  • library-catalog Public

    Stores a list of the repos that are included in the QIIME 2 library

    qiime2/library-catalog’s past year of commit activity
    0 BSD-3-Clause 8 1 1 Updated Sep 22, 2025
  • q2cli Public

    Command line interface for QIIME 2

    qiime2/q2cli’s past year of commit activity
    Python 19 BSD-3-Clause 27 12 2 Updated Sep 18, 2025
  • q2-diversity Public
    qiime2/q2-diversity’s past year of commit activity
    Python 3 BSD-3-Clause 44 45 2 Updated Sep 18, 2025