ADD: detect donor indicators pipeline #80
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: ci-q2-fmt | |
| on: | |
| pull_request: | |
| branches: ["dev"] | |
| push: | |
| branches: ["dev"] | |
| jobs: | |
| ci: | |
| uses: qiime2/distributions/.github/workflows/lib-community-ci.yaml@dev | |
| with: | |
| github-repo: q2-fmt | |
| env-file-name: 2024.10-q2-fmt-environment.yml | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: checkout source | |
| uses: actions/checkout@v4 | |
| - name: install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -q flake8 | |
| pip install -q https://github.com/qiime2/q2lint/archive/master.zip | |
| - name: Lint plugin | |
| shell: bash -l {0} | |
| run: | | |
| cd q2-fmt | |
| flake8 | |
| q2lint | |