Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

NEW: adds validator for Dist1D[Nested] #22

Merged
merged 2 commits into from
May 29, 2024
Merged

NEW: adds validator for Dist1D[Nested] #22

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
832cec8
merge new validator changes
cherman2 May 15, 2024
c4ec2d7
validator for Dist1D[NestedOrdered]
cherman2 May 15, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 11 additions & 1 deletion q2_stats/_validator.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,8 @@

from qiime2.plugin import ValidationError
from q2_stats.plugin_setup import plugin
from q2_stats import Dist1D, Ordered, Unordered, Matched, Independent
from q2_stats import (Dist1D, Ordered, Unordered, NestedOrdered,
NestedUnordered, Matched, Independent)


@plugin.register_validator(Dist1D[Ordered | Unordered,
Expand All @@ -34,3 +35,12 @@ def validate_unique_subjects_within_group(data: pd.DataFrame, level):
'Unique subject found more than once within an individual'
' group. Group(s) where duplicated subject was found:'
f' [{group_id}] Duplicated subjects: {dupes}')


@plugin.register_validator(Dist1D[NestedOrdered | NestedUnordered,
Matched | Independent])
def validate_all_nesteddist_columns_present(data: pd.DataFrame, level):
req_cols = ['id', 'measure', 'group', 'class', "level"]
for col in req_cols:
if col not in data.columns:
raise ValidationError(f'"{col}" not found in distribution.')
Loading