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Add support for S3 in HubModel #12

Add support for S3 in HubModel

Add support for S3 in HubModel #12

name: Test (Linux, private)
on:
push:
branches:
[main, 0.15.x, 0.16.x, 0.17.x, 0.18.x, 0.19.x, 0.20.x, 1.0.x, 1.1.x]
pull_request:
branches:
[main, 0.15.x, 0.16.x, 0.17.x, 0.18.x, 0.19.x, 0.20.x, 1.0.x, 1.1.x]
workflow_dispatch:
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
test:
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -e {0} # -e to fail on error
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python: ["3.11"]
environment:
name: private_test
permissions:
id-token: write
name: ${{ matrix.name }} Python ${{ matrix.python }} private
env:
OS: ${{ matrix.os }}
PYTHON: ${{ matrix.python }}
steps:
- uses: actions/checkout@v4
- uses: aws-actions/configure-aws-credentials@v4
with:
audience: sts.amazonaws.com
role-to-assume: arn:aws:iam::${{ secrets.AWS_IAM }}:role/scvi-tools_private_test
aws-region: us-west-2
role-duration-seconds: 3600
- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python }}
cache: "pip"
cache-dependency-path: "**/pyproject.toml"
- name: Install test dependencies
run: |
python -m pip install --upgrade pip wheel
- name: Install dependencies
run: |
pip install ".[tests]"
- name: Test
env:
MPLBACKEND: agg
PLATFORM: ${{ matrix.os }}
DISPLAY: :42
run: |
coverage run -m pytest -v --color=yes --private
- name: Report coverage
run: |
coverage report
- name: Upload coverage
uses: codecov/codecov-action@v3