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49 Open 985 Closed
49 Open 985 Closed
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Issues list

Training fails with mini-batch size of one sample bug
#3035 opened Oct 31, 2024 by LeonHafner
1
3
Inconsistency in covariate injection into layer enhancement
#3021 opened Oct 19, 2024 by Hrovatin
3
Support metric and loss loging on step enhancement
#3020 opened Oct 19, 2024 by Hrovatin
2
Support training from AnnCollection enhancement
#3018 opened Oct 17, 2024 by jacobkimmel
2
Fix custom dataloader registry enhancement P0
#2907 opened Jul 23, 2024 by canergen
1
@ori-kron-wis
2
Use explicit configs instead of kwargs enhancement
#2904 opened Jul 18, 2024 by martinkim0 scvi-tools 2.0
Jax version of VAEMixin backlog enhancement good first issue jax
#2779 opened May 6, 2024 by justjhong
Consider non-jitting MRVI tests/long tests pytest flag backlog P2
#2774 opened May 2, 2024 by martinkim0
Training models with torch.Tensor input enhancement P1
#2736 opened Apr 22, 2024 by j-bac scvi-tools 1.2
@ori-kron-wis
4
Use TensorBoard as default logger enhancement good first issue P2
#2645 opened Apr 2, 2024 by martinkim0 scvi-tools 2.0
Mixed usage of n_samples_overall in get_normalized_expression P1
#2641 opened Apr 1, 2024 by martinkim0
2
torch.distributed.DistBackendError when training on multiple GPUs bug P0
#2635 opened Mar 28, 2024 by CytoLiorG scvi-tools 1.3
5
PyroModelGuideWarmup fails on GPU - probably need to be manually run before trainer.fit() bug P0
#2616 opened Mar 18, 2024 by vitkl
@canergen
4
Failing to train on multiple GPUs in jupyter notebook bug P1
#2602 opened Mar 6, 2024 by chem1kal1 scvi-tools 1.3
@martinkim0
4
Enable checkpointing with autotune good first issue P1
#2580 opened Feb 29, 2024 by martinkim0 scvi-tools 1.2
@martinkim0 @ori-kron-wis
Assess whether we should deprecate more scvi.data functions backlog enhancement
#2551 opened Feb 25, 2024 by martinkim0
Remove scvi.data.cellxgene P2
#2543 opened Feb 21, 2024 by martinkim0
@martinkim0
Consider adding tensor/array shape annotations with jaxtyping backlog
#2541 opened Feb 21, 2024 by martinkim0
1
Add support for NumPy 2 dependencies Pull requests that update a dependency file enhancement P0
#2390 opened Jan 11, 2024 by martinkim0
1
@martinkim0
Adding cycle consistency loss and VampPrior to scVI enhancement P1
#2383 opened Jan 9, 2024 by Hrovatin scvi-tools 1.3
1
23
multi-GPU vs. single GPU - scvi 1.1.x branch bug P0
#2364 opened Dec 8, 2023 by zhenxingjian scvi-tools 1.3
3
Implement conditional batch/layer normalization enhancement good first issue P1
#2349 opened Dec 6, 2023 by martinkim0 scvi-tools 1.3
@canergen
1
Separate out unit and integration tests CI/CD good first issue P2 tests
#2311 opened Oct 30, 2023 by martinkim0
@martinkim0
Make JAX an optional dependency enhancement P1
#2281 opened Oct 10, 2023 by martinkim0 scvi-tools 2.0
4
MultiVI with Poisson/NB likelihood for ATAC? enhancement P1
#2257 opened Sep 6, 2023 by vitkl
8
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