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Add experimental tags
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Martin Kim committed Aug 16, 2023
1 parent f2ab131 commit efecee7
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Showing 2 changed files with 5 additions and 5 deletions.
2 changes: 1 addition & 1 deletion scvi/model/base/_vaemixin.py
Original file line number Diff line number Diff line change
Expand Up @@ -149,7 +149,7 @@ def get_latent_representation(
batch_size: int | None = None,
return_dist: bool = False,
) -> np.ndarray | tuple[np.ndarray, np.ndarray]:
"""Return the latent representation for each cell.
"""``EXPERIMENTAL`` Return the latent representation for each cell.
This is typically denoted as :math:`z_n`.
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8 changes: 4 additions & 4 deletions scvi/module/_vae.py
Original file line number Diff line number Diff line change
Expand Up @@ -71,11 +71,11 @@ class VAE(BaseMinifiedModeModuleClass):
Whether to concatenate covariates into output of hidden layers in encoder/decoder. This option
only applies when `n_layers` > 1. The covariates are concatenated to the input of subsequent hidden layers.
use_batch_embedding
If ``True``, encodes batch indexes using an embedding layer. Otherwise,
uses one-hot encodings.
``EXPERIMENTAL`` If ``True``, encodes batch indexes using an embedding
layer. Otherwise, uses one-hot encodings.
batch_embedding_dim
If ``use_batch_embedding`` is ``True``, specifies the dimensionality of
the batch embedding layer.
``EXPERIMENTAL`` If ``use_batch_embedding`` is ``True``, specifies the
dimensionality of the batch embedding layer.
use_batch_norm
Whether to use batch norm in layers.
use_layer_norm
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