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Merge pull request #382 from scverse/ori-kron-wis-patch-2
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Update run_notebook_macos.yaml
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ori-kron-wis authored Dec 19, 2024
2 parents 23850a5 + 3c5028b commit 842e867
Showing 1 changed file with 9 additions and 10 deletions.
19 changes: 9 additions & 10 deletions .github/workflows/run_notebook_macos.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -27,26 +27,25 @@ jobs:
steps:
- uses: actions/checkout@v4

# - name: Create Conda environment and install dependencies
# run: |
# conda init bash
# source ~/.bash_profile
# conda activate scvi
- name: Create Conda environment and install dependencies
run: |
conda init bash
source ~/.bash_profile
conda activate scvi
# - name: Install dependencies
# run: |
# python -m pip install --upgrade pip wheel uv
# python -m pip install "scvi-tools[tests]"
# python -m pip install jax-metal
# python -m ipykernel install

- name: Install Python kernel
run: |
python -m ipykernel install
# - name: Install Python kernel
# run: |
# python -m ipykernel install --user

- name: Run notebook
run: |
python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }}
python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }}
- uses: peter-evans/create-pull-request@v5
with:
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