[FIX] Missing include

seqan · May 6, 2024 · 457d093 · 457d093
1 parent f489f67
commit 457d093
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diff --git a/include/seqan3/io/sam_file/format_bam.hpp b/include/seqan3/io/sam_file/format_bam.hpp
@@ -18,6 +18,7 @@
 
 #include <seqan3/alphabet/nucleotide/dna16sam.hpp>
 #include <seqan3/core/debug_stream/optional.hpp>
+#include <seqan3/core/debug_stream/tuple.hpp>
 #include <seqan3/io/sam_file/detail/cigar.hpp>
 #include <seqan3/io/sam_file/detail/format_sam_base.hpp>
 #include <seqan3/io/sam_file/header.hpp>

diff --git a/test/unit/io/sam_file/CMakeLists.txt b/test/unit/io/sam_file/CMakeLists.txt
@@ -5,6 +5,7 @@
 seqan3_test (format_bam_test.cpp CYCLIC_DEPENDING_INCLUDES include-seqan3-io-sam_file-format_sam.hpp)
 seqan3_test (format_sam_test.cpp CYCLIC_DEPENDING_INCLUDES include-seqan3-io-sam_file-format_bam.hpp)
 seqan3_test (sam_file_input_test.cpp)
+seqan3_test (sam_file_output_include_test.cpp)
 seqan3_test (sam_file_output_test.cpp)
 seqan3_test (sam_file_record_test.cpp)
 seqan3_test (sam_file_seek_test.cpp)

diff --git a/test/unit/io/sam_file/sam_file_output_include_test.cpp b/test/unit/io/sam_file/sam_file_output_include_test.cpp
@@ -0,0 +1,26 @@
+// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
+// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
+// SPDX-License-Identifier: BSD-3-Clause
+
+#include <gtest/gtest.h>
+
+// seqan3/io/sam_file/format_bam.hpp did not include core/debug_stream/tuple.hpp
+// having only the following include leads to a compile error
+#include <seqan3/io/sam_file/output.hpp>
+
+TEST(sam_file_output, include)
+{
+    using sam_file_output_t = seqan3::sam_file_output<seqan3::fields<seqan3::field::id>,
+                                                      seqan3::type_list<seqan3::format_sam, seqan3::format_bam>,
+                                                      std::vector<std::string>>;
+    std::string buffer{};
+    std::ostringstream stream{buffer};
+    {
+        sam_file_output_t out{stream, std::vector<std::string>{}, std::vector<size_t>{}, seqan3::format_sam{}};
+        out.emplace_back(std::string{});
+    }
+    {
+        sam_file_output_t out{stream, std::vector<std::string>{}, std::vector<size_t>{}, seqan3::format_bam{}};
+        out.emplace_back(std::string{});
+    }
+}