4.1.0

Several major updates, importantly including changes to command line arguments and r10.4.1 output coordinates

• Added RNA004 support, accessible via rna004_130bps_9mer preset
• Added signal-to-read alignment via uncalled4 align --self, which aligns to the basecalled read sequence defined in the BAM "SEQ" field
• Changed r10.4.1 output coordinates to be centered on central base. Underlying algorithm is unchanged, mainly affects TSV output and visualizations.
• Changed all positional arguments to flags (e.g. reference FASTA defined via --ref option, read signal defined via --reads
• Added model2tsv.py to convert preset pore models to TSV files