Several major updates, importantly including changes to command line arguments and r10.4.1 output coordinates
- Added RNA004 support, accessible via
rna004_130bps_9merpreset - Added signal-to-read alignment via
uncalled4 align --self, which aligns to the basecalled read sequence defined in the BAM "SEQ" field - Changed r10.4.1 output coordinates to be centered on central base. Underlying algorithm is unchanged, mainly affects TSV output and visualizations.
- Changed all positional arguments to flags (e.g. reference FASTA defined via
--refoption, read signal defined via--reads - Added
model2tsv.pyto convert preset pore models to TSV files