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Add the comment on glyco-searching and the search summary on the result file #2367

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merged 24 commits into from
Aug 23, 2024

Commits on May 28, 2024

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Commits on Jun 4, 2024

  1. Try to add the search summary information (PSMs, protein group, glyco…

    …Psms, Level1-glycoPsms) into the "AllResult.txt" file for glycoSearch
    
    (1) adding text function in PostGlycoSearchAnalysisTask class
    (2) adding tester in TestOGlyco class (make sure we parse the certain value)
    (3) revise the "readCsv", enable to read the allPSMs file smoothly.
    RayMSMS committed Jun 4, 2024
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Commits on Jun 5, 2024

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  2. add the contaminant tester

    RayMSMS committed Jun 5, 2024
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Commits on Jun 6, 2024

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Commits on Jun 10, 2024

  1. Try to pass the coverage test, add the docoy filtering tester

    We also allow to get the same PSMs in duplicated files.
    RayMSMS committed Jun 10, 2024
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Commits on Jun 13, 2024

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Commits on Jun 26, 2024

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Commits on Jul 2, 2024

  1. update 7/2/2024

    (1) Rewrite the Summary writing function
    (2)Add the <summary> comment in the fuction header
    RayMSMS committed Jul 2, 2024
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Commits on Jul 3, 2024

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Commits on Jul 4, 2024

  1. Update 7/4/2024

    1. add new tester model for "OGlycanCompositionFragments"
    RayMSMS committed Jul 4, 2024
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Commits on Jul 5, 2024

  1. update 7/5/2024

    1. add the tester for writing function, in different search type
    2. glycoBox tester for decoy glycanBox
    RayMSMS committed Jul 5, 2024
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Commits on Jul 11, 2024

  1. update 7/11/2024

    1. delete the bin and retry to pass the tester
    RayMSMS committed Jul 11, 2024
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Commits on Jul 30, 2024

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Commits on Aug 6, 2024

  1. merge in master

    RayMSMS committed Aug 6, 2024
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  2. update 8/6/2024

    deleted the duplicate tester
    RayMSMS committed Aug 6, 2024
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  3. store the code

    RayMSMS committed Aug 6, 2024
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Commits on Aug 15, 2024

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Commits on Aug 19, 2024

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