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Add the VTML200 substitution matrix #769

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Add the VTML200 substitution matrix #769

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32 changes: 32 additions & 0 deletions data/VTML200.out
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Original file line number Diff line number Diff line change
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#
# VTML_200
#
# This matrix was produced from: vtml_200qij.mat using vtml_P.mat background frequencies
#
# VTML_200 substitution matrix, Units = bits/3.0
# Expected score = -0.358430 bits; Entropy = 0.412084 bits
# Target fraction identity = 0.2295
# Lowest Score = -6, Highest Score= 15
#
A C D E F G H I K L M N P Q R S T V W Y X
A 4 1 -1 -1 -3 0 -2 -1 -1 -2 -1 -1 0 -1 -2 1 1 0 -4 -3 0
C 1 12 -4 -4 -3 -2 -2 0 -4 -3 -1 -2 -3 -3 -3 1 0 1 -6 0 0
D -1 -4 6 3 -6 -1 0 -5 0 -5 -4 3 -1 1 -2 0 -1 -4 -6 -4 0
E -1 -4 3 5 -5 -1 0 -4 1 -4 -3 1 -1 2 -1 0 -1 -3 -6 -3 0
F -3 -3 -6 -5 8 -5 0 0 -5 2 1 -4 -4 -3 -4 -3 -3 -1 3 5 0
G 0 -2 -1 -1 -5 8 -2 -6 -2 -5 -4 0 -2 -2 -2 0 -2 -4 -5 -5 0
H -2 -2 0 0 0 -2 8 -3 0 -2 -3 1 -2 2 1 0 -1 -3 -1 3 0
I -1 0 -5 -4 0 -6 -3 5 -3 3 2 -4 -4 -3 -3 -3 -1 4 -2 -2 0
K -1 -4 0 1 -5 -2 0 -3 5 -3 -2 1 -1 2 4 0 0 -3 -4 -3 0
L -2 -3 -5 -4 2 -5 -2 3 -3 5 3 -4 -3 -2 -3 -3 -2 2 -1 -1 0
M -1 -1 -4 -3 1 -4 -3 2 -2 3 6 -3 -3 -1 -2 -2 -1 2 -3 -2 0
N -1 -2 3 1 -4 0 1 -4 1 -4 -3 6 -2 1 0 1 0 -3 -5 -2 0
P 0 -3 -1 -1 -4 -2 -2 -4 -1 -3 -3 -2 9 -1 -1 0 -1 -3 -4 -5 0
Q -1 -3 1 2 -3 -2 2 -3 2 -2 -1 1 -1 5 2 0 0 -2 -6 -3 0
R -2 -3 -2 -1 -4 -2 1 -3 4 -3 -2 0 -1 2 7 -1 -1 -3 -3 -2 0
S 1 1 0 0 -3 0 0 -3 0 -3 -2 1 0 0 -1 4 2 -2 -4 -2 0
T 1 0 -1 -1 -3 -2 -1 -1 0 -2 -1 0 -1 0 -1 2 4 0 -5 -3 0
V 0 1 -4 -3 -1 -4 -3 4 -3 2 2 -3 -3 -2 -3 -2 0 4 -4 -2 0
W -4 -6 -6 -6 3 -5 -1 -2 -4 -1 -3 -5 -4 -6 -3 -4 -5 -4 15 4 0
Y -3 0 -4 -3 5 -5 3 -2 -3 -1 -2 -2 -5 -3 -2 -2 -3 -2 4 9 0
X 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1