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652 Open 1,005 Closed
652 Open 1,005 Closed
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Issues list

sketching files containing many small sequences: manysketch is astonishingly fast
#3252 opened Jul 14, 2024 by ctb
2
do tax commands pay attention to md5sum instead of just name?
#3251 opened Jul 14, 2024 by ctb
sourmash branchwater: descriptions, links, alternatives, and related projects fyi Information that is interesting or useful infodump long-running issue for information, links, etc. magsearch MAGsearch - search all the things
#3248 opened Jul 11, 2024 by ctb
AllTheBacteria v0.2 sourmash databases: draft
#3247 opened Jul 10, 2024 by ctb
new GTDB databases for rs220: draft
#3246 opened Jul 9, 2024 by ctb
do a contamination analysis on AllTheBacteria?
#3240 opened Jul 4, 2024 by ctb
tutorial: combine results from multiple fastgather database searches using picklists
#3239 opened Jul 3, 2024 by ctb
containment search tutorial: searching for genomes in metagenomes tutorial links to tutorials
#3237 opened Jul 1, 2024 by ctb
add gather implementation benchmarks to sourmash docs
#3232 opened Jun 30, 2024 by ctb
explore extending branchwater plugin to load zip files for prefetch and gather, entirely on rust side?
#3230 opened Jun 29, 2024 by ctb
1
play with dists2trees
#3228 opened Jun 29, 2024 by ctb
pytest is hanging at end of (successful) run on farm
#3227 opened Jun 29, 2024 by ctb
2
use SaveSignaturesToLocation context manager properly in sig commands
#3215 opened Jun 16, 2024 by ctb
improve sourmash-rs core error reporting for bad/empty zip files rust
#3213 opened Jun 16, 2024 by ctb
enable protein sketches for pangenome hash correlations
#3201 opened Jun 10, 2024 by AnneliektH
4
update docs with pretty pictures from betterplot plugin
#3198 opened Jun 10, 2024 by ctb
2
refactor calculate_gather_stats to avoid calculating intersections twice rust
#3196 opened Jun 9, 2024 by ctb
sourmash_plugin_directsketch - download and sketch data directly plugin a plugin for sourmash!
#3192 opened Jun 6, 2024 by ctb
update API documentation around saving/loading sketches for v5
#3189 opened Jun 4, 2024 by ctb
How does Sourmash cope with genome redundancy in GenBank reference genomes
#3188 opened Jun 4, 2024 by Amanda-Biocortex
4
sig filter consumes a lot of memory.
#3187 opened Jun 3, 2024 by ctb
GTDB release 9 - RS220 - databases
#3183 opened Jun 3, 2024 by jorondo1
4
standard plugin utils library - good idea or bad idea?
#3182 opened Jun 3, 2024 by ctb
1
update docs around gather against reference genomes with abundances doc documentation content or issues
#3181 opened May 29, 2024 by ctb
sourmash_plugin_pangenomics - tools for sourmash-based pangenome analyses plugin a plugin for sourmash!
#3179 opened May 28, 2024 by ctb
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