v1.0.3

Notifications

From this version, ufcg will be published as a bioconda package.

New features

• ufcg binary - 08f9efd
  • Redirected java -jar command into a simple shell script binary for further convenience
• convert module - b53e5e7
  • Converts .ucg file into a FASTA file by compiling its nucleotide/protein sequences with designated headers
• download module - a1d7504
  • Allows for downloading search databases to drastically reduce the package size
• align and tree modules now only includes single-copy genes for downstream analyses - #4, 6424f44
  • -c option introduced for these modules, which allows for multiple copies to be analyzed
  • Thanks to @BrigidaGallone

Bug fixes

• Removed file deletion script using java.lang.ProcessBuilder, replaced with java.io.File - #2, 6c6656b
• Replaced substring matching to entire string matching in FASTA parser - #3, 19f9826
• Timeout wrapped around augustus run to prevent excessive resource consumption - #5, d6a4742
• Stabilized profile interaction module - 01dd389
• Minor fixes on program options and prompt messages

Notes

Special thanks to @Sebastien-Raguideau for their helpful reviews and suggestions!