refactor: Remove cgat[core] imports and dependencies #46
Workflow file for this run
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| name: Tests (pytest) | |
| on: | |
| pull_request: | |
| types: | |
| - opened | |
| - ready_for_review | |
| - reopened | |
| - synchronize | |
| paths: | |
| - "**.csv" | |
| - "**.npy" | |
| - "**.out" | |
| - "**.pkl" | |
| - "**.png" | |
| - "**.py" | |
| - "**.toml" | |
| - "**.yaml" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| name: Ex1 (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Upgrade pip and install test dependencies | |
| run: | | |
| pip install --upgrade virtualenv | |
| pip install --upgrade pip setuptools | |
| virtualenv --upgrade-embed-wheels | |
| pip install -e .[tests] | |
| - name: Test with pytest | |
| run: | | |
| pytest --cov=isoslam --cov-report=xml --mpl -x | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v5 | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 | |
| timeout-minutes: 5 |